View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16935_low_20 (Length: 238)
Name: NF16935_low_20
Description: NF16935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16935_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 52721318 - 52721553
Alignment:
| Q |
1 |
tccaacagaaatacgctttctttaattggtttttctttgctatcaacttgggttctcttcttggaatcacgatattggtttatgcacaagataaactagg |
100 |
Q |
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| T |
52721318 |
tccaacagaaatacgctttctttaattggtttttctttgctatcaacatgggttctcttcttggaatcacgatattggtttatgcacaagataaactagg |
52721417 |
T |
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| Q |
101 |
gtggggttggggtgttggaatacccacaataactatggttttatctatcgttcttctagctgctggtgttcggtattaccgttttcaaaagccaatggga |
200 |
Q |
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| T |
52721418 |
gtggggttggggttttggaatacccacaataactatggttttatctatcgttcttctagctgctggtgttcggtattaccgttttcaaaagccaatggga |
52721517 |
T |
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| Q |
201 |
agcccttttactaggtttcttcaggttattgtagcc |
236 |
Q |
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| T |
52721518 |
agcccttttactaggtttcttcaggttattgtagcc |
52721553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 52712497 - 52712732
Alignment:
| Q |
1 |
tccaacagaaatacgctttctttaattggtttttctttgctatcaacttgggttctcttcttggaatcacgatattggtttatgcacaagataaactagg |
100 |
Q |
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| T |
52712497 |
tccaaaagaaatacgctttctttaattggtttttctttgctatcaacatgggtgctcttcttggaatcacgatattggtttatgcacaagataaactagg |
52712596 |
T |
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| Q |
101 |
gtggggttggggtgttggaatacccacaataactatggttttatctatcgttcttctagctgctggtgttcggtattaccgttttcaaaagccaatggga |
200 |
Q |
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| T |
52712597 |
gtggggttggggttttggaattcccacaataactacggttttatctatcgttgttctagctgccggtgttcggtattaccgtttccaaaagccaatggga |
52712696 |
T |
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| Q |
201 |
agcccttttactaggtttcttcaggttattgtagcc |
236 |
Q |
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| T |
52712697 |
agcccttttactaggtttcttcaggttattgtagcc |
52712732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 52698693 - 52698912
Alignment:
| Q |
16 |
ctttctttaattggtttttctttgctatcaacttgggttctcttcttggaatcacgatattggtttatgcacaagataaactagggtggggttggggtgt |
115 |
Q |
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| T |
52698693 |
ctttctttaattggttttactttgccatcaacatgggtgcccttcttggaattacactattggtttatttacaaaaccaagtagggtggagttggggttt |
52698792 |
T |
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| Q |
116 |
tggaatacccacaataactatggttttatctatcgttcttctagctgctggtgttcggtattaccgttttcaaaagccaatgggaagcccttttactagg |
215 |
Q |
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| T |
52698793 |
tgcattacccacaataactacgattatatctatcgttatcttggccgttggtattccgtattatcgttttcaaaaaccaatgggaagcccattcactagg |
52698892 |
T |
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| Q |
216 |
tttcttcaggttattgtagc |
235 |
Q |
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|||||||||||||||||||| |
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| T |
52698893 |
tttcttcaggttattgtagc |
52698912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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