View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16935_low_3 (Length: 522)
Name: NF16935_low_3
Description: NF16935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16935_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 286 - 500
Target Start/End: Complemental strand, 33120459 - 33120245
Alignment:
| Q |
286 |
tatattaattgtaacaaaaatataaattataacactaatgtgtgatatatatgttttttcagatacggcaaagtacatccaagagcttaagaaactgtta |
385 |
Q |
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| T |
33120459 |
tatattaattgtaacaaaaatataaattataacactaatgtgtgatatatatgttttttcagatacggcaaagtacatccaagagcttaagaaactgtta |
33120360 |
T |
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| Q |
386 |
caaactccaactgaaataacagtggtgctttcgtttctgatttttcccaagggtgttcctcagttgctttatgatggtgctaccaagactacggttcgta |
485 |
Q |
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| T |
33120359 |
caaactccaactgaaataacagtggtgctttcgtttctgatttttcccaaggatgttcctcagttgctttatgatggtgctaccaagactacggttcgta |
33120260 |
T |
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| Q |
486 |
tattttctttgttac |
500 |
Q |
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| T |
33120259 |
tattttctttgttac |
33120245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 33120699 - 33120521
Alignment:
| Q |
18 |
tcgatactttttaatatgtttaattgtttaattaaattcgaga-------taattaattttattaactatgtagggagcataagcaagaactctcccact |
110 |
Q |
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| T |
33120699 |
tcgatactttttaatatttttaattgcttaattaaattcgagaatatgtataattaattttattaactatgtagggagcataagcaagaactctcccact |
33120600 |
T |
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| Q |
111 |
atggtcaaaagatcaacatcatcctcagtagactgaggaagcagatcacggtctgtcgtcaacaaataggtcagtaaat |
189 |
Q |
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| T |
33120599 |
atggtcaaaagatcaacatcatcctcagtagactgaggaagcagatcacggtctgtcgtcaacaaataggtcagtaaat |
33120521 |
T |
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