View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16935_low_7 (Length: 464)

Name: NF16935_low_7
Description: NF16935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16935_low_7
NF16935_low_7
[»] chr3 (4 HSPs)
chr3 (7-344)||(32251112-32251449)
chr3 (53-191)||(38208172-38208309)
chr3 (425-464)||(32251530-32251569)
chr3 (425-464)||(32229038-32229077)
[»] chr8 (2 HSPs)
chr8 (54-197)||(12069745-12069888)
chr8 (222-276)||(12069926-12069980)
[»] chr1 (1 HSPs)
chr1 (54-161)||(36374281-36374388)
[»] chr7 (4 HSPs)
chr7 (53-171)||(8845551-8845669)
chr7 (277-333)||(8960950-8961006)
chr7 (281-336)||(5661889-5661944)
chr7 (226-292)||(8845722-8845789)
[»] chr5 (2 HSPs)
chr5 (122-166)||(35960830-35960874)
chr5 (281-333)||(8281933-8281985)
[»] chr4 (1 HSPs)
chr4 (278-336)||(7601443-7601501)
[»] chr2 (1 HSPs)
chr2 (283-336)||(36885986-36886039)


Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 7 - 344
Target Start/End: Original strand, 32251112 - 32251449
Alignment:
Q  7 tccaagaatatgagggactaaaattacatgtagacttctattatgcttttttacttgacttacaaatggctcagaaatgtctcgtattgcagttttcaca 106  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32251112 tccaacaaaatgagggactaaaattacatgtagacttctattatgcttttttacttgacttacaaatggctcagaaatgtcccgtattgcagttttcaca 32251211  T
Q  107 aatccacatcgaagacagtatattccaatttcttcatccaatctataatcatgttcacaactttcattgaattctttcttggtatcagctacaacttcag 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32251212 aatccacatcgaagacagtatattccaatttcttcatccaatctataatcatgttcacaactttcattgaattctttcttggtatcagctacaacttcag 32251311  T
Q  207 aacttgaaccctgctatatttgaactgaatcagactttagccttataaaagaagataaaaccaaaaaacagaaattaattcatatacatcatcagtgtag 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32251312 aacttgaaccctgctatatttgaactgaatcagactttagccttataaaagaagataaaaccaaaaaacagaaattaattcatatacatcatcagcgtag 32251411  T
Q  307 agactttgtacactgtcaatcaatcataattttcacat 344  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  32251412 agactttgtacactgtcaaccaatcataattttcacat 32251449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 191
Target Start/End: Complemental strand, 38208309 - 38208172
Alignment:
Q  53 ttttttacttgacttacaaatggctcagaaatgtctcgtattgcagttttcacaaatccacatcgaagacagtatattccaatttcttcatccaatctat 152  Q
    |||||||||| ||||||||| || ||||||||||||| ||   | ||||||||||| || |||| |||   ||||||||||||||||||||| ||| |||    
T  38208309 ttttttacttaacttacaaagggttcagaaatgtctcctacctcggttttcacaaagccgcatctaaggt-gtatattccaatttcttcatctaatttat 38208211  T
Q  153 aatcatgttcacaactttcattgaattctttcttggtat 191  Q
    | | ||| |||||| |||  |||||||| ||||||||||    
T  38208210 agttatgctcacaaatttacttgaattccttcttggtat 38208172  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 425 - 464
Target Start/End: Original strand, 32251530 - 32251569
Alignment:
Q  425 tgtcacacaccgcagctccatcaagaagataacttgatgt 464  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  32251530 tgtcacacaccgcagttccatcaagaagataacttgatgt 32251569  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 464
Target Start/End: Original strand, 32229038 - 32229077
Alignment:
Q  425 tgtcacacaccgcagctccatcaagaagataacttgatgt 464  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  32229038 tgtcacacacctcagttccatcaagaagataacttgatgt 32229077  T

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Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 54 - 197
Target Start/End: Original strand, 12069745 - 12069888
Alignment:
Q  54 tttttacttgacttacaaatggctcagaaatgtctcgtattgcagttttcacaaatccacatcgaagacagtatattccaatttcttcatccaatctata 153  Q
    ||||||||||||||||||  || ||| |||||| ||||||  |||||||||||||  | |||  | | |||||||||||||||| ||||||||||| |||    
T  12069745 tttttacttgacttacaatgggttcataaatgtatcgtatctcagttttcacaaagtcgcatgtatggcagtatattccaatttgttcatccaatcgata 12069844  T
Q  154 atcatgttcacaactttcattgaattctttcttggtatcagcta 197  Q
    ||||||||| ||  |||| |||||||||||||| || |||||||    
T  12069845 atcatgttctcatatttccttgaattctttctttgtgtcagcta 12069888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 276
Target Start/End: Original strand, 12069926 - 12069980
Alignment:
Q  222 atatttgaactgaatcagactttagccttataaaagaagataaaaccaaaaaaca 276  Q
    ||||||||||  |||||| ||||||||||| || |||||||||||||||||||||    
T  12069926 atatttgaacataatcagcctttagccttaaaatagaagataaaaccaaaaaaca 12069980  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 54 - 161
Target Start/End: Complemental strand, 36374388 - 36374281
Alignment:
Q  54 tttttacttgacttacaaatggctcagaaatgtctcgtattgcagttttcacaaatccacatcgaagacagtatattccaatttcttcatccaatctata 153  Q
    ||||||||||||||||||  || |||||||||| ||||||  ||||||||||||| || |||  | | |||||||||||||||| ||||||||||| |||    
T  36374388 tttttacttgacttacaatgggttcagaaatgtatcgtatctcagttttcacaaagccgcatgtacggcagtatattccaatttgttcatccaatcgata 36374289  T
Q  154 atcatgtt 161  Q
    ||||||||    
T  36374288 atcatgtt 36374281  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 171
Target Start/End: Original strand, 8845551 - 8845669
Alignment:
Q  53 ttttttacttgacttacaaatggctcagaaatgtctcgtattgcagttttcacaaatccacatcgaagacagtatattccaatttcttcatccaatctat 152  Q
    ||||||||||||||||||| ||| |||||||||||||||||  | ||||||||| | || || | ||||||| ||||||| ||||||||||  ||  |||    
T  8845551 ttttttacttgacttacaactggttcagaaatgtctcgtatctcggttttcacagagccgcagctaagacagaatattccgatttcttcattgaacgtat 8845650  T
Q  153 aatcatgttcacaactttc 171  Q
    | |||||||||||| ||||    
T  8845651 agtcatgttcacaaatttc 8845669  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 8960950 - 8961006
Alignment:
Q  277 gaaattaattcatatacatcatcagtgtagagactttgtacactgtcaatcaatcat 333  Q
    |||||| ||||||||| |||||||||||| ||| ||| |||||||||||||||||||    
T  8960950 gaaattcattcatatatatcatcagtgtaaagattttttacactgtcaatcaatcat 8961006  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 336
Target Start/End: Complemental strand, 5661944 - 5661889
Alignment:
Q  281 ttaattcatatacatcatcagtgtagagactttgtacactgtcaatcaatcataat 336  Q
    ||||||||||||||  ||||||| | ||| ||| ||||||||||||||||||||||    
T  5661944 ttaattcatatacactatcagtggaaagattttttacactgtcaatcaatcataat 5661889  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 292
Target Start/End: Original strand, 8845722 - 8845789
Alignment:
Q  226 ttgaactgaatcagactttagccttataaaagaagataaaaccaaaa-aacagaaattaattcatata 292  Q
    ||||| |||||||| ||||| ||||| ||||||||||||||||||||  ||| || ||||||||||||    
T  8845722 ttgaaatgaatcagcctttaaccttagaaaagaagataaaaccaaaatcacataatttaattcatata 8845789  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 35960830 - 35960874
Alignment:
Q  122 cagtatattccaatttcttcatccaatctataatcatgttcacaa 166  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  35960830 cagtatattccaatttcttcatccaatctattatcatgttcacaa 35960874  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 8281933 - 8281985
Alignment:
Q  281 ttaattcatatacatcatcagtgtagagactttgtacactgtcaatcaatcat 333  Q
    |||||||||||||||||||||| || ||| ||| ||||||| | |||||||||    
T  8281933 ttaattcatatacatcatcagtataaagattttttacactgcctatcaatcat 8281985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 278 - 336
Target Start/End: Complemental strand, 7601501 - 7601443
Alignment:
Q  278 aaattaattcatatacatcatcagtgtagagactttgtacactgtcaatcaatcataat 336  Q
    ||||| |||||||||||| ||||||||| ||| ||| ||||||||||||||||||||||    
T  7601501 aaattcattcatatacattatcagtgtaaagattttttacactgtcaatcaatcataat 7601443  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 336
Target Start/End: Original strand, 36885986 - 36886039
Alignment:
Q  283 aattcatatacatcatcagtgtagagactttgtacactgtcaatcaatcataat 336  Q
    |||| |||||||||||||||||| |||  || |||||| |||||||||||||||    
T  36885986 aatttatatacatcatcagtgtaaagatattttacactatcaatcaatcataat 36886039  T

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