View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16935_low_8 (Length: 382)
Name: NF16935_low_8
Description: NF16935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16935_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 20 - 367
Target Start/End: Original strand, 30717149 - 30717495
Alignment:
| Q |
20 |
tatcaagcatacaacaaacagaacagaactattcttatctcagggaaagaactcaatgtaaaatttactgatatagtatgaagcatcacattcactctct |
119 |
Q |
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| T |
30717149 |
tatcaagcatacaacaaacagaa-agaactattcttatctcagggaaagaactcaatgtaaaatttactgatatagtatgaagcatcacattcactatct |
30717247 |
T |
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| Q |
120 |
ttacatcttcataatccaaacctagaattggttaaatggatcaacaacacaacacatatactataagtctataactgtaagagagaaaagcaagagaatg |
219 |
Q |
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| T |
30717248 |
ttacatcttcataatccaaacctagaattggttaaatggatcaacaacacaacacatatactataagtctataactgtaagagagaaaagcaagagaatg |
30717347 |
T |
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| Q |
220 |
attgagtcatttactcagcacgaagcagaatcaacaattgacacggaagattgaagagattgaatactgctcctgttacgcctgggcaccaattttgcag |
319 |
Q |
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| T |
30717348 |
attgagtcatttactcagcacgaagcagaatcaacaattgacacggaagattgaagagattgaatactgctcctcttacgcctcggcaccaattttgcag |
30717447 |
T |
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| Q |
320 |
cttctagcttacgcttaaaagtttcaggaatgagactacggctctgtg |
367 |
Q |
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| T |
30717448 |
cttctagcttacgcttaaaagtttcaggagtgagactacggctctgtg |
30717495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 240 - 355
Target Start/End: Complemental strand, 30894841 - 30894726
Alignment:
| Q |
240 |
cgaagcagaatcaacaattgacacggaagattgaagagattgaatactgctcctgttacgcctgggcaccaattttgcagcttctagcttacgcttaaaa |
339 |
Q |
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|||||||||||||||||| || ||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| || |
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| T |
30894841 |
cgaagcagaatcaacaatcgaagcggaagagtgaagagattgaatactgctcctcttacgccttggcaccaattttgtagcttctagcttacgcttagaa |
30894742 |
T |
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| Q |
340 |
gtttcaggaatgagac |
355 |
Q |
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| T |
30894741 |
gtttcaggaatgagac |
30894726 |
T |
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