View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16936_low_1 (Length: 495)
Name: NF16936_low_1
Description: NF16936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16936_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 170 - 480
Target Start/End: Complemental strand, 40407395 - 40407085
Alignment:
| Q |
170 |
aaagaaatcaaaacaacgtgtattttgatttaattagtttgattaatttctttatttgtttttggaaaaaatagaagtgggaatgctaggagatcctatt |
269 |
Q |
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| T |
40407395 |
aaagaaatcaaaacaacgtgtattttgatttaattagtttgattaatttctttatttgtttttggaaaaaatagaagtgggaatgctaggagatcctatt |
40407296 |
T |
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| Q |
270 |
ggagcaagaattgaaggattaagtcttgatggagaaatggaaagcgatagcgacggtacacaagctggtgtcttacctattatgggcttagaagaaatat |
369 |
Q |
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| T |
40407295 |
ggagcaagaattgaaggattaagtcttgatggagaaatggaaagcgatagcgacggtacacaagctggtgtcttacctattatgggcttagaagaaatat |
40407196 |
T |
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| Q |
370 |
ccacaaaagaacttggagctgaaaaatatttgataaatctaaagaacttttaagtgaatcatgtttaaatttataaagtttgatatatgtgtctctt-ag |
468 |
Q |
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| T |
40407195 |
ccacaaaagaacttggagctgaaaaatatttgataaatctaaagaac-tttaagtgaatcatgtttaaatttataaagtttgatatatgtgtctcttaag |
40407097 |
T |
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| Q |
469 |
ctcaagtatttg |
480 |
Q |
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| T |
40407096 |
ctcaagtatttg |
40407085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 40407564 - 40407433
Alignment:
| Q |
1 |
tacttcaataacaaaaaatatgtttcgtgacacttatgttagatctaagatccgtaggtgtgttggtgtttacgagttttcctcagcacatagctaggtt |
100 |
Q |
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| T |
40407564 |
tacttcaataacaaaaaatatgtttggtgacacttatgttagatctaagatccgtaggtgtgttggcgtttacgagttttcctcaacacatagctaggtt |
40407465 |
T |
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| Q |
101 |
tataatcataacaaaaaacatggatgccctaa |
132 |
Q |
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| T |
40407464 |
tataatcataacaaaaaacatggatgccctaa |
40407433 |
T |
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