View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16936_low_2 (Length: 455)
Name: NF16936_low_2
Description: NF16936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16936_low_2 |
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| [»] scaffold0449 (1 HSPs) |
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Alignment Details
Target: scaffold0449 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 8 - 436
Target Start/End: Original strand, 4088 - 4530
Alignment:
| Q |
8 |
tgagatgaaactcatgcaaaggccaagaatgcatattgaaattttctcaatgtgatctttcaagtcctcagaaaggccaagaatgcataccttttgggtt |
107 |
Q |
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| T |
4088 |
tgagaagaaactcatgcaaaggccaagaatgcatactgaaattttctcaatgtgatctttcaagtcctgagaaaggccaagaatgcataccttttgggtt |
4187 |
T |
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| Q |
108 |
gtgatagccatggtgagggaagagaagaaatgagaaatgtggtagctgtagtcgatcataataggagtaatgagggaatttatatataccannnnnnnnn |
207 |
Q |
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| T |
4188 |
gtgatagccatggtgagggaagagaagaaatgagaaatgtggtagctgtagtcgatcataatgggagtaatgagggaatttatatataccattttttttt |
4287 |
T |
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| Q |
208 |
---aaggaagtgagagaaaaaacttga-----------gggaatttatacctttattttgttacataccatttaaatataaagagaattcaatataaaat |
293 |
Q |
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| T |
4288 |
tttaaggaagtgagagaaaaaacttgagggatttttgagggaatttatacctttattttgttacataccatttaaatataaagagaattcaatataaaat |
4387 |
T |
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| Q |
294 |
tgagctccatccattatagaatattttttagccttttgtaccaaaaaagaagaacaatctttattagactttaattaggtatagtttggctcacaatgga |
393 |
Q |
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| T |
4388 |
tgagctccatccattatagaatattttttagccttttgtaccaaaaaagaagaacaatctttattagactttaattaggtatagtttggctcacaatgga |
4487 |
T |
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| Q |
394 |
aagattcttgggagtagtgcttccatccatttaatttctgact |
436 |
Q |
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| T |
4488 |
aagattcttgggagtagtgcttccatccatttaatttgtgact |
4530 |
T |
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