View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16936_low_3 (Length: 348)
Name: NF16936_low_3
Description: NF16936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16936_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 329
Target Start/End: Original strand, 41733511 - 41733823
Alignment:
| Q |
17 |
cataggcacacatccaataggctctaataaaccaattgctattttgtttattcccaactcgtgaatacgttttagattcaatgacatttgctctataagg |
116 |
Q |
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| T |
41733511 |
cataggcacacatccaataggctctaataaaccaattgctattttgtttattcccaactcgtgaatacgttttagattcaatgacatttgctttataagg |
41733610 |
T |
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| Q |
117 |
gattcagtgaagataaatatatcctgccacaaagaaaaacaaaaggcgataattgatcgacaactaaagtcgataaaaaattgtattaactagaactcga |
216 |
Q |
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| T |
41733611 |
gattcagtgaagacaaatatatcctgccacaaagaaaaacaaaaggcgataattgatcgacaagtaaagtcgatcaaaaattgtattaactagaactcga |
41733710 |
T |
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| Q |
217 |
actcatattatctcaaacgaatcacccttaaatgaagttcattaaccaattgaatccatatttgatttatgtgaaactagtttgtagttttattatagag |
316 |
Q |
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| T |
41733711 |
actcagattatctcaaacgaatcacctttaaatgaagttcattaaccaattgaatccatatttgatttatgtgaaactagtttatagttttattatagag |
41733810 |
T |
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| Q |
317 |
gtggaaccaaatt |
329 |
Q |
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| T |
41733811 |
gtggaaccaaatt |
41733823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 41747612 - 41747702
Alignment:
| Q |
18 |
ataggcacacatccaataggctctaataaaccaattgctattttgtttattcccaactcgtgaatacgttttagattcaatgacatttgct |
108 |
Q |
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||||||| |||||| |||||||||||||| ||||||||||||| ||||||||||| ||||| ||||| ||||| ||||||| ||||| |
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| T |
41747612 |
ataggcaaacatcctataggctctaataatacaattgctattttatttattcccaaactttgaatgcgtttaagatttaatgacaattgct |
41747702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 41739410 - 41739466
Alignment:
| Q |
17 |
cataggcacacatccaataggctctaataaaccaattgctattttgtttattcccaa |
73 |
Q |
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|||||||| ||| || ||||| |||||||| |||||||||||||| ||||||||||| |
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| T |
41739410 |
cataggcaaacaccctataggttctaataatccaattgctattttatttattcccaa |
41739466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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