View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16936_low_5 (Length: 304)

Name: NF16936_low_5
Description: NF16936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16936_low_5
NF16936_low_5
[»] chr4 (3 HSPs)
chr4 (12-289)||(37049576-37049854)
chr4 (15-80)||(6659175-6659240)
chr4 (40-108)||(19852208-19852277)
[»] chr6 (2 HSPs)
chr6 (12-289)||(25167419-25167697)
chr6 (16-142)||(10989714-10989841)
[»] chr3 (5 HSPs)
chr3 (13-150)||(3395873-3396011)
chr3 (193-289)||(3396014-3396110)
chr3 (23-147)||(29346518-29346643)
chr3 (25-98)||(31163391-31163464)
chr3 (16-80)||(51524629-51524693)
[»] chr1 (3 HSPs)
chr1 (13-147)||(13062238-13062373)
chr1 (16-80)||(17115023-17115087)
chr1 (25-80)||(41035292-41035347)
[»] chr8 (3 HSPs)
chr8 (12-80)||(29368879-29368947)
chr8 (16-80)||(8831531-8831595)
chr8 (18-80)||(400030-400092)
[»] chr7 (1 HSPs)
chr7 (13-140)||(19408128-19408256)


Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 289
Target Start/End: Complemental strand, 37049854 - 37049576
Alignment:
Q  12 aaaggaggatttggaagcaggaaccaatatttggcttgaaggaagcttgtcaggtgtcaaactagcataactaacagttataggttg-ggcataggagta 110  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||  |||||||||||| ||||||||||||    
T  37049854 aaaggaggatttggaagcaggaaccaagatttggcttgaagggagcttgtcaggtgtcaaactagcatagctagtagttataggttgaggcataggagta 37049755  T
Q  111 agccctagagtatctacctaagcctttaacctatctggatttacagctctgacagaggtagcaggtatgacagaaacacccaacaactcagaaggcaatg 210  Q
    |||||| ||||||| ||| ||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37049754 agccctggagtatccaccgaagtctttaacctatctggatttacagttctgatagaggtagcaggtatgacagaaacacccaacaactcagaaggcaatg 37049655  T
Q  211 cttaaatcaaagcagggtcttcatgagtaatggtgatctttcttttatcaaggcttaaaacttcatcaacaaaggttat 289  Q
    ||| || ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37049654 cttgaaccaaagtagggtcctcatgagtaatggtgatctttcttttatcaaggcttaaaacttcatcaacagaggttat 37049576  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 6659175 - 6659240
Alignment:
Q  15 ggaggatttggaagcaggaaccaatatttggcttgaaggaagcttgtcaggtgtcaaactagcata 80  Q
    ||||| ||||||||| |||||||| |||||||||||||  |||||||||  | |||||||||||||    
T  6659175 ggagggtttggaagccggaaccaagatttggcttgaagagagcttgtcacttatcaaactagcata 6659240  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 19852277 - 19852208
Alignment:
Q  40 atttggcttgaaggaagcttgtcaggtgtcaaactagcataactaacagttataggttg-ggcataggag 108  Q
    ||||||||||||||  ||||||||  ||||||||||||||||||   ||||| |||||| ||||||||||    
T  19852277 atttggcttgaagggtgcttgtcacttgtcaaactagcataactggtagttacaggttgaggcataggag 19852208  T

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Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 289
Target Start/End: Complemental strand, 25167697 - 25167419
Alignment:
Q  12 aaaggaggatttggaagcaggaaccaatatttggcttgaaggaagcttgtcaggtgtcaaactagcataactaacagttataggttg-ggcataggagta 110  Q
    ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| |||  |||||||||||| ||||||||||||    
T  25167697 aaaggaggatttggaagcaggaaccaagatttgacttgaagggagcttgtcaggtgtcaaactagcatagctagtagttataggttgaggcataggagta 25167598  T
Q  111 agccctagagtatctacctaagcctttaacctatctggatttacagctctgacagaggtagcaggtatgacagaaacacccaacaactcagaaggcaatg 210  Q
    ||| || ||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25167597 agcactggagtatctacccaagtctttaacctatctgaatttacagctctgacagaggtagcaggtatgacagaaacacccaacaactcagaaggtaatg 25167498  T
Q  211 cttaaatcaaagcagggtcttcatgagtaatggtgatctttcttttatcaaggcttaaaacttcatcaacaaaggttat 289  Q
    ||| || |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  25167497 cttgaaccaaagcagggtcctcatgagtaatggtgacctttcttttatcaaggcttaaaacttcatcaacagaggttat 25167419  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 10989841 - 10989714
Alignment:
Q  16 gaggatttggaagcaggaaccaatatttggcttgaaggaagcttgtcaggtgtcaaactagcataactaacagttataggttg-ggcataggagtaagcc 114  Q
    ||||| |||||||||||||||||  ||||| ||||||| |||||||||  |||||||||||||||  |    ||| ||||||| |||||||||||||||     
T  10989841 gaggagttggaagcaggaaccaaagtttggtttgaagggagcttgtcaattgtcaaactagcatagttggttgttgtaggttgtggcataggagtaagca 10989742  T
Q  115 ctagagtatctacctaagcctttaacct 142  Q
    || ||||||||||| || |||| |||||    
T  10989741 ctggagtatctacccaatccttcaacct 10989714  T

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Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 3395873 - 3396011
Alignment:
Q  13 aaggaggatttggaagcaggaaccaatatttggcttgaaggaagcttgtcaggtgtcaaactagcataactaacagttataggttg-ggcataggagtaa 111  Q
    |||||||||||||| | ||||||||| |||||||||||||| ||||||  |  ||||||||||||||| |||  |||||||| ||| || ||||||||||    
T  3395873 aaggaggatttggatgtaggaaccaacatttggcttgaagggagcttgctatttgtcaaactagcatagctagtagttatagcttgcggtataggagtaa 3395972  T
Q  112 gccctagagtatctacctaagcctttaacctatctggat 150  Q
    || |||||||||||||| ||||||||||||| |||||||    
T  3395973 gcactagagtatctacccaagcctttaacctgtctggat 3396011  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 193 - 289
Target Start/End: Original strand, 3396014 - 3396110
Alignment:
Q  193 acaactcagaaggcaatgcttaaatcaaagcagggtcttcatgagtaatggtgatctttcttttatcaaggcttaaaacttcatcaacaaaggttat 289  Q
    |||||||||| |||||| ||| || |||||| ||||  |||||||||  ||||| |||| |||||||||||||||||||||||| |||| |||||||    
T  3396014 acaactcagagggcaattcttgaaccaaagcggggtactcatgagtagcggtgacctttattttatcaaggcttaaaacttcatgaacagaggttat 3396110  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 29346643 - 29346518
Alignment:
Q  23 tggaagcaggaaccaatatttggcttgaaggaagcttgtcaggtgtcaaactagcataactaacagttataggttg-ggcataggagtaagccctagagt 121  Q
    |||||| |||||||||  ||||||||||||| |||||||||| |||||||  |||||| ||   || ||||||||| |||||||| |||||| || ||||    
T  29346643 tggaaggaggaaccaaggtttggcttgaagggagcttgtcagctgtcaaataagcatagctggtaggtataggttgcggcataggggtaagcactggagt 29346544  T
Q  122 atctacctaagcctttaacctatctg 147  Q
    ||| ||| || |||||||||| ||||    
T  29346543 atccacccaaacctttaacctgtctg 29346518  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 31163391 - 31163464
Alignment:
Q  25 gaagcaggaaccaatatttggcttgaaggaagcttgtcaggtgtcaaactagcataactaacagttataggttg 98  Q
    ||||||||||||||  ||||| ||||||| |||||||||  ||||||||||||||||||||  |||||||||||    
T  31163391 gaagcaggaaccaaggtttggtttgaagggagcttgtcacttgtcaaactagcataactaatggttataggttg 31163464  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 51524693 - 51524629
Alignment:
Q  16 gaggatttggaagcaggaaccaatatttggcttgaaggaagcttgtcaggtgtcaaactagcata 80  Q
    |||| ||||||| || ||||||| |||||||||||||| |||||||||  |||||||||| ||||    
T  51524693 gagggtttggaaacatgaaccaagatttggcttgaagggagcttgtcacttgtcaaactatcata 51524629  T

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Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 13062238 - 13062373
Alignment:
Q  13 aaggaggatttggaagcaggaaccaatatttggcttgaaggaagcttgtcaggtgtcaaactagcataactaacagttataggttg-ggcataggagtaa 111  Q
    |||||||||||||||||| ||||||| |||||||||||||| |||||||||  ||||||| ||||||| ||   |||||||||||| |||||||||||||    
T  13062238 aaggaggatttggaagcaagaaccaagatttggcttgaagggagcttgtcaactgtcaaattagcatagctggtagttataggttgcggcataggagtaa 13062337  T
Q  112 gccctagagtatctacctaagcctttaacctatctg 147  Q
    |  || ||||||| ||| ||||||||||||| ||||    
T  13062338 gtactggagtatccacccaagcctttaacctgtctg 13062373  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 17115023 - 17115087
Alignment:
Q  16 gaggatttggaagcaggaaccaatatttggcttgaaggaagcttgtcaggtgtcaaactagcata 80  Q
    |||| ||||||| || ||||||| |||||||||||||  |||||||||  |||||||||||||||    
T  17115023 gagggtttggaaccatgaaccaagatttggcttgaagagagcttgtcatttgtcaaactagcata 17115087  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 41035292 - 41035347
Alignment:
Q  25 gaagcaggaaccaatatttggcttgaaggaagcttgtcaggtgtcaaactagcata 80  Q
    |||||| |||||||||||||||||||||| || ||||||  |||||||||| ||||    
T  41035292 gaagcatgaaccaatatttggcttgaagggagtttgtcacttgtcaaactatcata 41035347  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 29368947 - 29368879
Alignment:
Q  12 aaaggaggatttggaagcaggaaccaatatttggcttgaaggaagcttgtcaggtgtcaaactagcata 80  Q
    ||||||||||||||||||| |||||||  ||||||||||||| ||||| |||| |||||||||||||||    
T  29368947 aaaggaggatttggaagcatgaaccaaagtttggcttgaagggagcttatcagctgtcaaactagcata 29368879  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 8831531 - 8831595
Alignment:
Q  16 gaggatttggaagcaggaaccaatatttggcttgaaggaagcttgtcaggtgtcaaactagcata 80  Q
    ||||||||||||| || || ||| |||||||||||||| |||||||||  |||||||||||||||    
T  8831531 gaggatttggaagtagaaatcaagatttggcttgaagggagcttgtcacttgtcaaactagcata 8831595  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 400030 - 400092
Alignment:
Q  18 ggatttggaagcaggaaccaatatttggcttgaaggaagcttgtcaggtgtcaaactagcata 80  Q
    ||||||||||| |||||||||  ||||||||||||| ||| ||||   |||||||||||||||    
T  400030 ggatttggaagaaggaaccaaagtttggcttgaaggtagcgtgtctcttgtcaaactagcata 400092  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 19408128 - 19408256
Alignment:
Q  13 aaggaggatttggaagcaggaaccaatatttggcttgaaggaagcttgtcaggtgtcaaactagcataactaacagttataggttg-ggcataggagtaa 111  Q
    |||||||||||||||  || |||||| |||||||||||||| |||||||||| ||||||| ||||||| ||   |||||||||||| | ||| |||||||    
T  19408128 aaggaggatttggaataagtaaccaagatttggcttgaagggagcttgtcagttgtcaaattagcatagctggtagttataggttgagacatcggagtaa 19408227  T
Q  112 gccctagagtatctacctaagcctttaac 140  Q
    || || |||| || | | |||||||||||    
T  19408228 gcactggagtttccatccaagcctttaac 19408256  T

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