View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16936_low_7 (Length: 243)
Name: NF16936_low_7
Description: NF16936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16936_low_7 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 40087408 - 40087180
Alignment:
| Q |
15 |
catcatccagcactgcaccaacctcaaatgtcatcacatgagcaatcattcctgcactcaccaaccataatatcatatatcagacttaccaatcactatc |
114 |
Q |
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| T |
40087408 |
catcatccagcactgcaccaacctcaaatgtcatcacatgagcaatcattcctgcactcaccaaccataatatcatatatcagacttaccaatcactatc |
40087309 |
T |
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| Q |
115 |
aacacaactagtaattgacgaatttaataaacataaaatatttttcttgcaagtaatcattaagtagcatcgacacttcaaattaaagcagtgtcataca |
214 |
Q |
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| T |
40087308 |
aacacaactagtaattgacgaatttaataaacataaaatatttttcttgcaagtaatcattaagtagcatcgacacttcaaattaaaacagtgtcataca |
40087209 |
T |
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| Q |
215 |
tgtggtgtatatctgacacgggcatgata |
243 |
Q |
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| T |
40087208 |
tgtggtgtatatctgacacgggcacgata |
40087180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 169
Target Start/End: Complemental strand, 40082212 - 40082052
Alignment:
| Q |
10 |
atggacatcatccagcactgcaccaacctcaaatgtcatcacatgagcaatcattcctgcactcaccaaccataatatcatatatcagacttaccaatca |
109 |
Q |
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|||| |||||||||| ||||| ||||||||||||||||| ||||||| ||||||||||||| ||||||| ||| || ||||||||| ||| ||||||| |
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| T |
40082212 |
atgggcatcatccagaactgctccaacctcaaatgtcattacatgagtaatcattcctgcaatcaccaatcatcat---atatatcagccttgccaatca |
40082116 |
T |
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| Q |
110 |
ctatcaacacaactagtaattgacgaa----tttaataaacataaaatatttttcttgcaagta |
169 |
Q |
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| T |
40082115 |
cttgtaacacaattagtaattaattaattactttaataaacattacatatttttctagcaagta |
40082052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 40078086 - 40077979
Alignment:
| Q |
15 |
catcatccagcactgcaccaacctcaaatgtcatcacatgagcaatcattcctgcactcaccaaccataatatcatatatcagacttaccaatcactatc |
114 |
Q |
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| T |
40078086 |
catcatccagaactgctccaacctcaaatgtcatcacatcagtaatcattcctgcacttaccaccaatcatcatatacatcagccttgccaatcactagc |
40077987 |
T |
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| Q |
115 |
aacacaac |
122 |
Q |
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|||||||| |
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| T |
40077986 |
aacacaac |
40077979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 58
Target Start/End: Complemental strand, 44973747 - 44973712
Alignment:
| Q |
23 |
agcactgcaccaacctcaaatgtcatcacatgagca |
58 |
Q |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
44973747 |
agcactgctccaacctcaaatgtcatcacatgagca |
44973712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 58
Target Start/End: Complemental strand, 44975403 - 44975368
Alignment:
| Q |
23 |
agcactgcaccaacctcaaatgtcatcacatgagca |
58 |
Q |
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| T |
44975403 |
agcactgctccaacctcaaatgtcatcacatgagca |
44975368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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