View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16937_high_1 (Length: 572)
Name: NF16937_high_1
Description: NF16937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16937_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 84 - 249
Target Start/End: Original strand, 25610622 - 25610785
Alignment:
| Q |
84 |
caattctagaaacagttttttggtcttaactttttaattaaattaggatgctttcaattcttttttaggatattaagatattctgttaatagggagattt |
183 |
Q |
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|||||||||||||||||||||||| |||| ||| |||||||||||||||||||||| | | |||||| ||||||||||||| |||||||||| | |||| |
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| T |
25610622 |
caattctagaaacagttttttggttttaaatttg-aattaaattaggatgctttcaaatatgttttagtatattaagatattttgttaataggaa-attt |
25610719 |
T |
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| Q |
184 |
agatgttatcgattctgctttcgtagattaaggatttaagatattctgttataggagatttagctg |
249 |
Q |
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| T |
25610720 |
agatgttatcgattctgtttttgtagattaaggatttaagatattctgttttaggagatttagctg |
25610785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 84 - 249
Target Start/End: Complemental strand, 25826866 - 25826704
Alignment:
| Q |
84 |
caattctagaaacagttttttggtcttaactttttaattaaattaggatgctttcaattcttttttaggatattaagatattctgttaatagggagattt |
183 |
Q |
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| T |
25826866 |
caattctacaaacagttttttggtttcaaatttg-aattaaattaggatgctttcaattctgttttgttatattaagatattatgttaatagg-agattt |
25826769 |
T |
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| Q |
184 |
agatgttatcgattctgctttcgtagattaaggatttaagatattctgttataggagatttagctg |
249 |
Q |
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| T |
25826768 |
agatgttatcgattctgtttttgtagattaaggatttaagat-ttctgttttaggagatttagctg |
25826704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 25826957 - 25826897
Alignment:
| Q |
22 |
aaaagaaagtttgaagtcttgtgtaaaaagatcggaatctcaggtactgaagcaacgagta |
82 |
Q |
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| T |
25826957 |
aaaagaaagtttgaaatcttgtgtaaaaagatcggaatctcaggtactgaagcaacgagta |
25826897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 441 - 524
Target Start/End: Original strand, 25610843 - 25610926
Alignment:
| Q |
441 |
gcttctctttagaaaaagctctcagacgaacttatcatgaagctaacaccgaaaacttttctcctttcaagctaataaagagtt |
524 |
Q |
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| T |
25610843 |
gcttctctttagaaaaagttttgagaagaacttatcatgaaactaacacagaaaacttctctcctttcaagctaataaagagtt |
25610926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 25610529 - 25610591
Alignment:
| Q |
19 |
cctaaaagaaagtttgaagtcttgtgtaaaaagatcggaatctcaggtactgaagcaacgagta |
82 |
Q |
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| T |
25610529 |
cctaaaagaaagtt-gaagtcttgtgtaaaaagatcggaatctcagctactgaagcgacgagta |
25610591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 421
Target Start/End: Complemental strand, 25826557 - 25826513
Alignment:
| Q |
377 |
atgctaaaaggacttatcagagcttctcttttagatcaagcacta |
421 |
Q |
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| T |
25826557 |
atgctaaaaggacttatcaaagattctcttttagatcaagcacta |
25826513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 515
Target Start/End: Complemental strand, 25826441 - 25826398
Alignment:
| Q |
472 |
ttatcatgaagctaacaccgaaaacttttctcctttcaagctaa |
515 |
Q |
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| T |
25826441 |
ttatcatgaagctaacgcagaaaacttctctcctttcaagctaa |
25826398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 432
Target Start/End: Original strand, 25607821 - 25607862
Alignment:
| Q |
391 |
tatcagagcttctcttttagatcaagcactattgcttcttaa |
432 |
Q |
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| T |
25607821 |
tatcagagcttctcttttagaccaagcactaatgcttgttaa |
25607862 |
T |
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