View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16937_low_2 (Length: 560)
Name: NF16937_low_2
Description: NF16937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16937_low_2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 17 - 545
Target Start/End: Original strand, 45632748 - 45633283
Alignment:
| Q |
17 |
acatctcagtctaataaatatgttgagactacatatagtatcaaagagcttatgtctagagacagagttgtttcattagtccatatttatagagaagaca |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45632748 |
acatctcagcctaataaatatgttgagactacatatagtatcaaagagcttatgtctagaaacagagttgtttcattagtccatatttatagagaagaca |
45632847 |
T |
|
| Q |
117 |
atgtgcagactacatggcgaaagtgag----agtaaacagcttggatcttttaagaatattttcagagccactaccttgcttatcttcattacttttgtt |
212 |
Q |
| |
|
|||||||||||||||||| ||||| | || ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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|
| T |
45632848 |
atgtgcagactacatggcaaaagtacgtggaaggaaacagcttggatcttttaagaatatttttagagccactaccttgcttatcttctttacttttgtt |
45632947 |
T |
|
| Q |
213 |
tatattagtctataaatatgtagaccatataattttagtccttgaaatataaatcatacaaggactactatgaacatgatcaacgtggttgaccttcaac |
312 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
45632948 |
tatattagtctataaatatttagaccatataattttagtccttgaaatataaatcatacaaggactactattaacatgatcaacgtggttgaccttcaac |
45633047 |
T |
|
| Q |
313 |
aacctactctaacataaattaatgttttagacaaaaaagtgtatatgcatgcatatt---cggcttatttcacatcaaatttctataaattattcgttat |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
45633048 |
aacctactctaacataaattaatgttttagataaaaaagtgtatatacatgcatattcaacggcttacttcacatcaaatttctataaattattcgttat |
45633147 |
T |
|
| Q |
410 |
atattggccataaaatgcttaattacctgtctaaagcttcgaagtatctttgttttctcaattcaaagtatattttaattgaatgattattgtcttcaac |
509 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45633148 |
atattggccataaaatgcttaattacctgtctaaagcctcgaagtatctttgttttctcaattcaaagtatattttaattgaatgattattgtcttcaac |
45633247 |
T |
|
| Q |
510 |
ttttgtaaatccagaaagatatttctcaacttcatc |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
45633248 |
ttttgtaaatccagaaagatatttctcaacttcatc |
45633283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 45632333 - 45632381
Alignment:
| Q |
216 |
attagtctataaatatgtagaccatataattttagtccttgaaatataa |
264 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45632333 |
attattctataaatatgtagaccatataattttagtccttgaaatataa |
45632381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 34034739 - 34034800
Alignment:
| Q |
17 |
acatctcagtctaataaatatgttgagactacatatagtatcaaagagcttatgtctagaga |
78 |
Q |
| |
|
||||||||| || ||||||||||||||| ||| | |||||||| |||||| |||||||||| |
|
|
| T |
34034739 |
acatctcagcctcataaatatgttgagattacggagagtatcaaggagcttgtgtctagaga |
34034800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 449; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 17 - 545
Target Start/End: Complemental strand, 2658505 - 2657970
Alignment:
| Q |
17 |
acatctcagtctaataaatatgttgagactacatatagtatcaaagagcttatgtctagagacagagttgtttcattagtccatatttatagagaagaca |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2658505 |
acatctcagcctaataaatatgttgagactacatatagtatcaaagagcttatgtctagaaacagagttgtttcattagtccatatttatagagaagaca |
2658406 |
T |
|
| Q |
117 |
atgtgcagactacatggcgaaagtgag----agtaaacagcttggatcttttaagaatattttcagagccactaccttgcttatcttcattacttttgtt |
212 |
Q |
| |
|
|||||||||||||||||| ||||| | || ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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|
| T |
2658405 |
atgtgcagactacatggcaaaagtacgtggaaggaaacagcttggatcttttaagaatatttttagagccactaccttgcttatcttctttacttttgtt |
2658306 |
T |
|
| Q |
213 |
tatattagtctataaatatgtagaccatataattttagtccttgaaatataaatcatacaaggactactatgaacatgatcaacgtggttgaccttcaac |
312 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2658305 |
tatattagtctataaatatttagaccatataattttagtccttgaaatataaatcatacaaggactactattaacatgatcaacgtggttgaccttcaac |
2658206 |
T |
|
| Q |
313 |
aacctactctaacataaattaatgttttagacaaaaaagtgtatatgcatgcatatt---cggcttatttcacatcaaatttctataaattattcgttat |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2658205 |
aacctactctaacataaattaatgttttagataaaaaagtgtatatacatgcatattcaacggcttacttcacatcaaatttctataaattattcgttat |
2658106 |
T |
|
| Q |
410 |
atattggccataaaatgcttaattacctgtctaaagcttcgaagtatctttgttttctcaattcaaagtatattttaattgaatgattattgtcttcaac |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2658105 |
atattggccataaaatgcttaattacctgtctaaagcctcgaagtatctttgttttctcaattcaaagtatattttaattgaatgattattgtcttcaac |
2658006 |
T |
|
| Q |
510 |
ttttgtaaatccagaaagatatttctcaacttcatc |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
2658005 |
ttttgtaaatccagaaagatatttctcaacttcatc |
2657970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 2658920 - 2658872
Alignment:
| Q |
216 |
attagtctataaatatgtagaccatataattttagtccttgaaatataa |
264 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2658920 |
attattctataaatatgtagaccatataattttagtccttgaaatataa |
2658872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 408 - 545
Target Start/End: Original strand, 5879221 - 5879358
Alignment:
| Q |
408 |
atatattggccataaaatgcttaattacctgtctaaagcttcgaagtatctttgttttctcaattcaaagtatattttaattgaatgattattgtcttca |
507 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||| || || || | ||| |||| ||||| | ||||||| ||||||| | || ||| ||||||||| |
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|
| T |
5879221 |
atatattgagcataaaattcttaactacctgtccaatgcctcaagatatttttgctttctaagttcaaagaatattttggtggagtgaccgttgtcttca |
5879320 |
T |
|
| Q |
508 |
acttttgtaaatccagaaagatatttctcaacttcatc |
545 |
Q |
| |
|
|||||||| ||||||| |||||||||||| ||||||| |
|
|
| T |
5879321 |
acttttgtgaatccagttagatatttctcagcttcatc |
5879358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 502 - 545
Target Start/End: Original strand, 5875426 - 5875469
Alignment:
| Q |
502 |
tcttcaacttttgtaaatccagaaagatatttctcaacttcatc |
545 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||| ||||||| |
|
|
| T |
5875426 |
tcttcaacttttgtgaatccagatagatatttctcagcttcatc |
5875469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 550
Target Start/End: Original strand, 20444553 - 20444645
Alignment:
| Q |
458 |
tttgttttctcaattcaaagtatattttaattgaatgattattgtcttcaacttttgtaaatccagaaagatatttctcaacttcatctcact |
550 |
Q |
| |
|
|||||||||| | ||||| |||||||| ||||| |||| ||||||||||||||||| ||||| || |||||||||||| |||||| |||| |
|
|
| T |
20444553 |
tttgttttctaagctcaaaatatattttgattgagtgatcgttgtcttcaacttttgtgaatcctgatagatatttctcagtttcatcccact |
20444645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 550
Target Start/End: Original strand, 20409444 - 20409536
Alignment:
| Q |
458 |
tttgttttctcaattcaaagtatattttaattgaatgattattgtcttcaacttttgtaaatccagaaagatatttctcaacttcatctcact |
550 |
Q |
| |
|
|||||||||| | ||||| |||||||| ||||| |||| |||||||||||||||| ||||| || ||||| |||||| ||||||| |||| |
|
|
| T |
20409444 |
tttgttttctaagctcaaaatatattttgattgagtgatcgctgtcttcaacttttgtgaatcctgatagatacttctcagcttcatcccact |
20409536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 550
Target Start/End: Complemental strand, 20444497 - 20444419
Alignment:
| Q |
472 |
tcaaagtatattttaattgaatgattattgtcttcaacttttgtaaatccagaaagatatttctcaacttcatctcact |
550 |
Q |
| |
|
||||| |||||||| ||| | |||| ||||||||||||||||| ||||| || ||||| |||||| ||||||| |||| |
|
|
| T |
20444497 |
tcaaaatatattttgatttagtgatcgttgtcttcaacttttgtgaatcctgatagatagttctcagcttcatcccact |
20444419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 550
Target Start/End: Original strand, 20424852 - 20424944
Alignment:
| Q |
458 |
tttgttttctcaattcaaagtatattttaattgaatgattattgtcttcaacttttgtaaatccagaaagatatttctcaacttcatctcact |
550 |
Q |
| |
|
|||||||||| | ||||| |||||||| | | | |||| ||||||||||||||||| ||||| || |||||||| ||| ||||||| |||| |
|
|
| T |
20424852 |
tttgttttctaagctcaaaatatattttgactaagtgatcgttgtcttcaacttttgtgaatcctgatagatatttatcagcttcatcccact |
20424944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 34888891 - 34888953
Alignment:
| Q |
17 |
acatctcagtctaataaatatgttgagactacatatagtatcaaagagcttatgtctagagac |
79 |
Q |
| |
|
|||||||| ||| ||||||||||||||| | | |||||||||| ||| |||||||||||||| |
|
|
| T |
34888891 |
acatctcaatctcataaatatgttgagataaaagatagtatcaaggaggttatgtctagagac |
34888953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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