View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16937_low_3 (Length: 351)
Name: NF16937_low_3
Description: NF16937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16937_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 36522342 - 36522119
Alignment:
| Q |
11 |
catcatcatgggctttttccgatgctttggtaagaaggaactattaacattgaagttagtgtaaagtgggctgtgaaagatcatgtatacttgtactttt |
110 |
Q |
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| T |
36522342 |
catcatcatgggctttttccaatgttttggtaagaaggaactattagcattgaagttagtgtaaagtgggttgtgaaagatcatgtatacttgttctttt |
36522243 |
T |
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| Q |
111 |
tggtcctagaatagcgttatttgaatgtgtaaagggatttgaggaccaaaaaagtgggaatctgtcaacatatattggaagatacgttaagggttagcaa |
210 |
Q |
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| T |
36522242 |
tggtcctagaatagcgttatttgaatgtgtaaagggatttgaggaccaaaaaagtgggaatatgtcaacatatattggaagatacgttaagggttagcaa |
36522143 |
T |
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| Q |
211 |
taaatggaagctttaagttgattg |
234 |
Q |
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| T |
36522142 |
taaattgaagctttaagttgattg |
36522119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 36522048 - 36522017
Alignment:
| Q |
305 |
tggtcactattcaatggccatttggttagtta |
336 |
Q |
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| T |
36522048 |
tggtcactattcaatggccatttggttagtta |
36522017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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