View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16937_low_4 (Length: 285)
Name: NF16937_low_4
Description: NF16937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16937_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 24127254 - 24127008
Alignment:
| Q |
18 |
cttgaatatgcattttcccttaacaatgtatgcaactagtatgaatgcgtgtgtaattttctaatttctaataaaacttctttcatattaaagcagggct |
117 |
Q |
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| T |
24127254 |
cttgaatatgcattttcccttaacaatgtgtgcaactagtatgaatgcgtgtgtaattttctaatttctaatcaaacttctttcatattaaagcagggct |
24127155 |
T |
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| Q |
118 |
ggcattgcattagcaaactctcttcctagtgtgtttagagacaccatttttcttaatcgcgttcgtgtaagtattacctttcacataactatatacaaat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24127154 |
ggcattgcattagcaaactctcttcctagtgtgtttagagacaccatttttcttaatcgcgttcgtgtaagtatttcctttcacataactatatacaaat |
24127055 |
T |
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| Q |
218 |
ttgattcataacttgtttcatatatataggatatgatttaatgttac |
264 |
Q |
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| T |
24127054 |
ttgattcataacttgtttcatatagataggatatgatttaatgttac |
24127008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 37 - 264
Target Start/End: Original strand, 45161031 - 45161258
Alignment:
| Q |
37 |
ttaacaatgtatgcaactagtatgaatgcgtgtgtaattttctaatttctaataaaacttctttcatattaaagcagggctggcattgcattagcaaact |
136 |
Q |
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| T |
45161031 |
ttaataatgtgtgcaacttgtatgaatgcatgtgtatttttctaattttcaataaaacttctttcgtattaaagcagggctggcattgcattagcaaact |
45161130 |
T |
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| Q |
137 |
ctcttcctagtgtgtttagagacaccatttttcttaatcgcgttcgtgtaagtattacctttcacataactatatacaaatttgattcataacttgtttc |
236 |
Q |
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| T |
45161131 |
ctcttcctagtgtgtttagagacaccatttttcttaatcaccttcgtgtaagtatttcgtttcacataactatatacaaatttgattcataacttgtttg |
45161230 |
T |
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| Q |
237 |
atatatataggatatgatttaatgttac |
264 |
Q |
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| T |
45161231 |
atatagataggatatgatttaatgttac |
45161258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 67 - 264
Target Start/End: Complemental strand, 8722554 - 8722359
Alignment:
| Q |
67 |
tgtgtaattttctaatttctaataaaacttctttcatattaaagcagggctggcattgcattagcaaactctcttcctagtgtgtttagagacaccattt |
166 |
Q |
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| T |
8722554 |
tgtgtatttttctagtttccaataaaacttctttcatattaaagtagga-tgacattgcattagcaaactctcttccttatgtgtctagagacaccattt |
8722456 |
T |
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| Q |
167 |
ttcttaatcgcgttcgtgtaagtattacctttcacataactatatacaaatttgattcataacttgtttcatatatataggatatgatttaatgttac |
264 |
Q |
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| T |
8722455 |
tccttaatcactttcgtgtaaatctttcatttcacacaactttatacaattttgattcataacttgtttgat-tagatatcataagatttaatgttac |
8722359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 67 - 264
Target Start/End: Complemental strand, 9074441 - 9074246
Alignment:
| Q |
67 |
tgtgtaattttctaatttctaataaaacttctttcatattaaagcagggctggcattgcattagcaaactctcttcctagtgtgtttagagacaccattt |
166 |
Q |
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| T |
9074441 |
tgtgtatttttctagtttccaataaaacttctttcatattaaagtagga-tgacattgcattagcaaactctcttccttatgtgtctagagacaccattt |
9074343 |
T |
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| Q |
167 |
ttcttaatcgcgttcgtgtaagtattacctttcacataactatatacaaatttgattcataacttgtttcatatatataggatatgatttaatgttac |
264 |
Q |
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| T |
9074342 |
tccttaatcactttcgtgtaaatctttcatttcacacaactttatacaattttgattcataacttgtttgat-tagatatcataagatttaatgttac |
9074246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 175
Target Start/End: Complemental strand, 8716211 - 8716093
Alignment:
| Q |
56 |
gtatgaatgcgtgtgtaattttctaatttctaataaaacttctttcatattaaagcagggctggcattgcattagcaaactctcttcctagtgtgtttag |
155 |
Q |
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| T |
8716211 |
gtatgaattcatgtgtatttttctagtttacaataaaacttctttcatattaaagtagga-tgacattgcagtagcaaactctcttccttgtgtgtctag |
8716113 |
T |
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| Q |
156 |
agacaccatttttcttaatc |
175 |
Q |
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| T |
8716112 |
agacaccattttccttaatc |
8716093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 175
Target Start/End: Complemental strand, 9068098 - 9067980
Alignment:
| Q |
56 |
gtatgaatgcgtgtgtaattttctaatttctaataaaacttctttcatattaaagcagggctggcattgcattagcaaactctcttcctagtgtgtttag |
155 |
Q |
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| T |
9068098 |
gtatgaattcatgtgtatttttctagtttacaataaaacttctttcatattaaagtagga-tgacattgcagtagcaaactctcttccttgtgtgtctag |
9068000 |
T |
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| Q |
156 |
agacaccatttttcttaatc |
175 |
Q |
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| T |
9067999 |
agacaccattttccttaatc |
9067980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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