View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16938_low_1 (Length: 718)

Name: NF16938_low_1
Description: NF16938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16938_low_1
NF16938_low_1
[»] chr7 (20 HSPs)
chr7 (16-703)||(4784072-4784759)
chr7 (16-703)||(4816501-4817188)
chr7 (16-664)||(4697466-4698114)
chr7 (16-427)||(4846534-4846945)
chr7 (16-665)||(4863081-4863742)
chr7 (38-394)||(4712612-4712968)
chr7 (46-373)||(4642926-4643253)
chr7 (124-373)||(4671940-4672189)
chr7 (130-373)||(4661110-4661353)
chr7 (90-371)||(4630175-4630456)
chr7 (90-373)||(4666201-4666484)
chr7 (127-407)||(4652823-4653103)
chr7 (124-420)||(4636157-4636453)
chr7 (612-664)||(4672443-4672495)
chr7 (609-665)||(4712350-4712406)
chr7 (610-668)||(4630692-4630750)
chr7 (613-703)||(4636631-4636721)
chr7 (613-653)||(4643454-4643494)
chr7 (610-653)||(4846299-4846342)
chr7 (613-650)||(4666703-4666740)
[»] chr4 (2 HSPs)
chr4 (55-373)||(18926306-18926624)
chr4 (613-661)||(18926021-18926069)
[»] chr6 (1 HSPs)
chr6 (123-242)||(5479308-5479427)


Alignment Details
Target: chr7 (Bit Score: 488; Significance: 0; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 16 - 703
Target Start/End: Complemental strand, 4784759 - 4784072
Alignment:
Q  16 atctcgagtctcttcttccaagtaagaggttcgttatccgaaccatagagatattcacgaagagtgccacgttccatgaagtcgtaaacgagaatcatct 115  Q
    ||||| || |||| |||||| |||||||||| |||||| || ||||| ||||||||||  ||| ||||||||| ||||||||| ||||||||||||||||    
T  4784759 atctcaagcctctgcttccaggtaagaggtttgttatctgatccataaagatattcacatagactgccacgttgcatgaagtcataaacgagaatcatct 4784660  T
Q  116 ctgcaccttcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttg 215  Q
    || ||||||| |||||||||||||| || |||||||||||||| |||||||| |||||||||||||| || ||||||| ||||||||| ||||| |||||    
T  4784659 ctacaccttcattgcaatatccaataagtgaaaccaagtgaatatgacgaagctgagagagcaactcaatctcattcaagaactcgttcacaccttgttg 4784560  T
Q  216 agaacccggtttcaaacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaaaccctccaactccaatgataaaaatatct 315  Q
    |||||| ||||| | ||||||||| || || |||||| || |||| || ||||||||| |||| || || ||||||||||| || |||||||||||||||    
T  4784559 agaacctggtttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattgccgaaccctccaaccccgatgataaaaatatct 4784460  T
Q  316 tcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatgggatggtaaacttgaggaaccttgtttctttgtcttccatgaag 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4784459 tcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatgggatggtaaacttgaggaaccttgtttctttgtcttccatgaac 4784360  T
Q  416 tttcttccatttcagtatgagaattaaatattatattccgtctagcaaaaactgttattccaacaacagatgctagaatgagacatgaaacagcaaccac 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4784359 tttcttccatttcagtatgagaattaaatattatattccgtctagcaaaaactgttattccaacaacagatgctagaatgagacatgaaacagcaaccac 4784260  T
Q  516 agcaaggannnnnnnngttgatttcttccattgttgagttggtaaaacctgttccttgggagaaaaagacatgggttttggattcactccaaagagatta 615  Q
    ||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4784259 agcaaggatttttgttgttgatttcttccattgttgagttggtaaaacctgttccttgggagaaaaagacatgggttttggattcactccaaagagatta 4784160  T
Q  616 tttttatcacttattttcaaaatctcgattccattcaacgtgacatcacgatacaccgtaggcatagattttggtaatcgttgtagct 703  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  4784159 tttttatcacttattttcaaaatctcaattccattcaacgtgacatcacgatataccgtaggcataggttttggtaatcgttgtagct 4784072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 16 - 703
Target Start/End: Complemental strand, 4817188 - 4816501
Alignment:
Q  16 atctcgagtctcttcttccaagtaagaggttcgttatccgaaccatagagatattcacgaagagtgccacgttccatgaagtcgtaaacgagaatcatct 115  Q
    ||||| || |||| |||||| |||||||||| |||||| || ||||| ||||||||||  ||| ||||||||| ||||||||| ||||||||||||||||    
T  4817188 atctcaagcctctgcttccaggtaagaggtttgttatctgatccataaagatattcacatagactgccacgttgcatgaagtcataaacgagaatcatct 4817089  T
Q  116 ctgcaccttcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttg 215  Q
    || ||||||| |||||||||||||| || |||||||||||||| |||||||| |||||||||||||| || ||||||| ||||||||| ||||| |||||    
T  4817088 ctacaccttcattgcaatatccaataagtgaaaccaagtgaatatgacgaagctgagagagcaactcaatctcattcaagaactcgttaacaccttgttg 4816989  T
Q  216 agaacccggtttcaaacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaaaccctccaactccaatgataaaaatatct 315  Q
    |||||| ||||| | ||||||||| || || |||||| || |||| || ||||||||| |||| || || ||||||||||| || |||||||||||||||    
T  4816988 agaaccaggtttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattgccgaaccctccaaccccgatgataaaaatatct 4816889  T
Q  316 tcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatgggatggtaaacttgaggaaccttgtttctttgtcttccatgaag 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4816888 tcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatgggatggtaaacttgaggaaccttgtttctttgtcttccatgaaa 4816789  T
Q  416 tttcttccatttcagtatgagaattaaatattatattccgtctagcaaaaactgttattccaacaacagatgctagaatgagacatgaaacagcaaccac 515  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4816788 tttcttcaatttcagtatgagaattaaatattatattccgtctagcaaaaactgttattccaacaacagatgctagaatgagacatgaaacagcaaccac 4816689  T
Q  516 agcaaggannnnnnnngttgatttcttccattgttgagttggtaaaacctgttccttgggagaaaaagacatgggttttggattcactccaaagagatta 615  Q
    ||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4816688 agcaaggatttttgttgttgatttcttccattgttgagttggtaaaacctgttccttgggagaaaaagacatgggttttggattcactccaaagagatta 4816589  T
Q  616 tttttatcacttattttcaaaatctcgattccattcaacgtgacatcacgatacaccgtaggcatagattttggtaatcgttgtagct 703  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||| |||||||||||| |||||||    
T  4816588 tttttatcacttattttcaaaatctcaattccattcaacgtgacatcacgatataccgaaggcataggttttggtaatcgatgtagct 4816501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 16 - 664
Target Start/End: Complemental strand, 4698114 - 4697466
Alignment:
Q  16 atctcgagtctcttcttccaagtaagaggttcgttatccgaaccatagagatattcacgaagagtgccacgttccatgaagtcgtaaacgagaatcatct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4698114 atctcgagtctcttcttccaagtaagaggttcgttatccgaaccatagagatattcacgaagagtgccacgttccatgaagtcgtaaacgagaatcatct 4698015  T
Q  116 ctgcaccttcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttg 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4698014 ctgcaccttcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccttgttg 4697915  T
Q  216 agaacccggtttcaaacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaaaccctccaactccaatgataaaaatatct 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4697914 agaacccggtttcaaacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaaaccctccaactccaatgataaaaatatct 4697815  T
Q  316 tcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatgggatggtaaacttgaggaaccttgtttctttgtcttccatgaag 415  Q
    ||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||  ||||| ||||||||     
T  4697814 tcgaagttgtttgtagcggctcttatctccgctattgtaaaatagcggcacaaatgggatggtaaagttgacgaaccttcttttcttgtcctccatgaac 4697715  T
Q  416 tttcttccatttcagtatgagaattaaatattatattccgtctagcaaaaactgttattc---caacaacagatgctagaatgagacatgaaacagcaac 512  Q
    |||||||||||||| ||||||| | || | || |  ||| ||||||| ||||| | ||||   |||||||| ||||||| | |||||||||||   | ||    
T  4697714 tttcttccatttcaatatgagattcaagtcttcttctccttctagcataaactatgattcccacaacaacaaatgctagcaagagacatgaaa---ctac 4697618  T
Q  513 cacagcaaggannnnnnnngttgatttcttccattgttgagttggtaaaacctgttccttgggagaaaaagacatgggttttggattcactccaaagaga 612  Q
     ||| ||||||        ||||||||||||  ||||| |||||||||||| | |||||||| ||| | |    |  ||||||||||   ||||||||||    
T  4697617 aacaacaaggataactgttgttgatttcttctgttgtttagttggtaaaacattttccttggaagatata---ttaagttttggatttgatccaaagaga 4697521  T
Q  613 tt---atttttatcacttattttcaaaatctcgattccattcaacgtgacatcac 664  Q
    ||   |||||||||| ||||||||||||||||||| |||||||| ||||||||||    
T  4697520 ttatcatttttatcatttattttcaaaatctcgatgccattcaatgtgacatcac 4697466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 16 - 427
Target Start/End: Complemental strand, 4846945 - 4846534
Alignment:
Q  16 atctcgagtctcttcttccaagtaagaggttcgttatccgaaccatagagatattcacgaagagtgccacgttccatgaagtcgtaaacgagaatcatct 115  Q
    ||||||||||| |  |||||  |||||||||| ||||||||||||||||||| |||||  ||||| ||||||| ||||||||| ||||| ||||||||||    
T  4846945 atctcgagtctttgattccacctaagaggttcattatccgaaccatagagatgttcactgagagtaccacgttgcatgaagtcataaactagaatcatct 4846846  T
Q  116 ctgcaccttcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttg 215  Q
    ||||| |||||||||||||||||||||| |||||||||||||| |||||||| |||||||||| |||||||||||||||||| || |||| ||| | | |    
T  4846845 ctgcatcttcgttgcaatatccaatgagggaaaccaagtgaatatgacgaagctgagagagcatctcgatttcattcatgaattcatttagaccttatcg 4846746  T
Q  216 agaacccggtttcaaacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaaaccctccaactccaatgataaaaatatct 315  Q
    ||||||||||||   ||||||||| || ||||||||   | ||| ||||||||||||| ||||||| || ||||||||| ||||||||||||||||||||    
T  4846745 agaacccggtttacgacgttttatcgcaacaggtgtgagtccattgatgtaacctttgtacacgttgccgaaccctccagctccaatgataaaaatatct 4846646  T
Q  316 tcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatgggatggtaaacttgaggaaccttgtttctttgtcttccatgaag 415  Q
    |||||||||||||||||| || |||| |||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| |||||||||||||||     
T  4846645 tcgaagttgtttgtagcttctcttatctccgctattgtaaaatagcggcacaaatgggacggtaaagttgaggaaccttctttgtttgtcttccatgaac 4846546  T
Q  416 tttcttccattt 427  Q
    ||||||||||||    
T  4846545 tttcttccattt 4846534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 16 - 665
Target Start/End: Original strand, 4863081 - 4863742
Alignment:
Q  16 atctcgagtctcttcttccaagtaagaggttcgttatccgaaccatagagatattcacgaagagtgccacgttccatgaagtcgtaaacgagaatcatct 115  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||| ||||||||||||||||    
T  4863081 atctcaagtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaacgagaatcatct 4863180  T
Q  116 ctgcaccttcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttg 215  Q
    |  |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||| |||||||||||||| |||| ||| |||||    
T  4863181 cctcaccttcgttgcaatatccaatgagagaaaccaagtgaatatgacgaagctgagagagtaattcgatctcattcatgaactcatttataccttgttg 4863280  T
Q  216 agaacccggtttcaaacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaaaccctccaactccaatgataaaaatatct 315  Q
    |||||| ||||| | ||||||||| || |||||| |  || |||| || ||||||||| ||||||| || |||||||||||||||||||| ||||||||     
T  4863281 agaacctggtttaagacgttttatcgcaacaggtatgtctccatcaatataacctttgtacacgttgccgaaccctccaactccaatgatgaaaatatcg 4863380  T
Q  316 tcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatgggatggtaaacttgaggaa------ccttgtttctttgtcttcc 409  Q
    || |||||||||||||| ||| |||| || | ||||||||||||||||||||||||||||||||||   || |||      |||| ||||||| |  |||    
T  4863381 tcaaagttgtttgtagcagctcttatctctgttattgtaaaatagcggcacaaatgggatggtaaagacgatgaaacttcgccttctttcttttttgtcc 4863480  T
Q  410 atgaagtttcttccat---ttcagtatgagaattaaatattatattccgtctagcaaaaactgttattccaacaacagatgctagaatgagacatgaaac 506  Q
    ||||  |||| |||||   ||||  |||||| | |||| || |  | | |||| |||||||| | | ||||| |||||||||||| || |||||||||||    
T  4863481 atgagctttcatccatttcttcaacatgagattcaaatcttcttcttcttctaacaaaaactatcactccaataacagatgctagcataagacatgaaac 4863580  T
Q  507 agcaaccacagcaaggannnnnnnngttgatttcttccattgttgagttggtaaaacctgttccttgggagaaaaagacatgggttttggattcactcca 606  Q
      |||| ||| | | ||        |||||||||||| | || | |||||||||| | |||||  ||||||| | |   | |||||||||||||| ||||    
T  4863581 tacaacaacaacgacgataactatggttgatttcttcgactgctcagttggtaaaccttgttctgtgggagatagaataaagggttttggattcagtcca 4863680  T
Q  607 aaga---gattatttttatcacttattttcaaaatctcgattccattcaacgtgacatcacg 665  Q
    ||||    |||||||||||| |||||||| ||||||||||||||||||||||| ||||||||    
T  4863681 aagaaattattatttttatcgcttattttaaaaatctcgattccattcaacgtaacatcacg 4863742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 38 - 394
Target Start/End: Complemental strand, 4712968 - 4712612
Alignment:
Q  38 taagaggttcgttatccgaaccatagagatattcacgaagagtgccacgttccatgaagtcgtaaacgagaatcatctctgcaccttcgttgcaatatcc 137  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||| ||||||| ||||| ||||| ||||||||||||||| |||| |||||||||||    
T  4712968 taagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgcatcttcattgcaatatcc 4712869  T
Q  138 aatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttgagaacccggtttcaaacgtttt 237  Q
    |||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||| || |||| ||| ||| ||||||||  |||   |||||||    
T  4712868 aatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatgaattcatttagaccttgtcgagaacccaatttacgacgtttt 4712769  T
Q  238 attgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaaaccctccaactccaatgataaaaatatcttcgaagttgtttgtagctgctt 337  Q
    || || |||||| |   | |||| |||||||||||| ||||||| || || |||||||| || |||||||||||||||||||||||||||||||| |||     
T  4712768 atcgcaacaggtatgagtccatcaatgtaacctttgtacacgttgccgaatcctccaaccccgatgataaaaatatcttcgaagttgtttgtagcggctc 4712669  T
Q  338 ttatttccgctattgtaaaatagcggcacaaatgggatggtaaacttgaggaacctt 394  Q
    |||||||| |||| |||||| | || |||||||||||||||||| |||| |||||||    
T  4712668 ttatttccactatagtaaaacatcgacacaaatgggatggtaaaattgatgaacctt 4712612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 46 - 373
Target Start/End: Original strand, 4642926 - 4643253
Alignment:
Q  46 tcgttatccgaaccatagagatattcacgaagagtgccacgttccatgaagtcgtaaacgagaatcatctctgcaccttcgttgcaatatccaatgagag 145  Q
    |||||||  |||||||| ||||| |||| |||||| ||  | | |||||| || ||||| | |||||||||||   | |||||||||||||| | ||| |    
T  4642926 tcgttattagaaccataaagatactcacaaagagtaccgtgctgcatgaactcataaaccaaaatcatctctgtgtcatcgttgcaatatcccacgaggg 4643025  T
Q  146 aaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttgagaacccggtttcaaacgttttattgctac 245  Q
    | |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||  |||| |||||||| |||| ||| |  || || |  || ||    
T  4643026 acaccaagtgaatgtggcgaagctgggagagcaactcgatttcattcatgaactcgttggcaccttgttgagagcccgatttgaggcgcttaaccgcaac 4643125  T
Q  246 aggtgtaccttcatcgatgtaacctttgaacacgttaccaaaccctccaactccaatgataaaaatatcttcgaagttgtttgtagctgcttttatttcc 345  Q
    | ||||   | |||| |   |||||||| ||||||| ||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||| || ||     
T  4643126 aagtgtggatccatcaacacaacctttgtacacgttgccaaaccctccaactccgatgataaaagcatcatcgaagttgtttgtagctgctttgatctct 4643225  T
Q  346 gctattgtaaaatagcggcacaaatggg 373  Q
    || ||||||||  ||||||||| |||||    
T  4643226 gcgattgtaaaggagcggcacagatggg 4643253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 124 - 373
Target Start/End: Original strand, 4671940 - 4672189
Alignment:
Q  124 tcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttgagaacccg 223  Q
    |||| ||||||||||| ||| || |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||  |||| || ||||| ||||    
T  4671940 tcgtcgcaatatccaacgagggataccaagtgaatgtggcgaagttgagagagtaactcgatttcgttcatgaactcgttggcaccttgctgagagcccg 4672039  T
Q  224 gtttcaaacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaaaccctccaactccaatgataaaaatatcttcgaagtt 323  Q
     ||| |  |||||||| || ||| ||||   | ||||||   |||||||| ||| ||| ||||||||||||||||| |||||| ||  ||| ||||||||    
T  4672040 atttgagccgttttatggcaacaagtgtggatccatcgacacaacctttgtacaggtttccaaaccctccaactccgatgatagaagcatcatcgaagtt 4672139  T
Q  324 gtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatggg 373  Q
    |||||| |||||||| || || || ||||||||  | |||||||| ||||    
T  4672140 gtttgtggctgctttgatctctgcgattgtaaaggaacggcacaagtggg 4672189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 130 - 373
Target Start/End: Original strand, 4661110 - 4661353
Alignment:
Q  130 caatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttgagaacccggtttca 229  Q
    |||||||| ||||| || ||||| |||||||| ||||| || ||||||||||||||||| |||||||||||||| ||||| |||||||| |||| ||| |    
T  4661110 caatatcccatgagggacaccaaatgaatgtggcgaagctgggagagcaactcgatttcgttcatgaactcgttgacaccttgttgagagcccgatttga 4661209  T
Q  230 aacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaaaccctccaactccaatgataaaaatatcttcgaagttgtttgt 329  Q
      ||||| || || ||| ||||   | |||| |   |||||||| ||||||| ||||||||||||||||||||||| |||  ||| || ||||| |||||    
T  4661210 ggcgtttaatcgcaacaagtgttgatccatcaacacaacctttgtacacgttgccaaaccctccaactccaatgatgaaatcatcatcaaagttttttgt 4661309  T
Q  330 agctgcttttatttccgctattgtaaaatagcggcacaaatggg 373  Q
     |||||| | || || || |||||||| ||||||||||||||||    
T  4661310 ggctgctctgatctctgcaattgtaaagtagcggcacaaatggg 4661353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 90 - 371
Target Start/End: Original strand, 4630175 - 4630456
Alignment:
Q  90 catgaagtcgtaaacgagaatcatctctgcaccttcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttca 189  Q
    |||||| || ||||| |||||||||||||     || ||||||||||| |  || || |||||||||||||| ||||| || |||||||||||||||||     
T  4630175 catgaactcataaaccagaatcatctctgtgttgtcattgcaatatcctacaagggacaccaagtgaatgtggcgaagctgggagagcaactcgatttcg 4630274  T
Q  190 ttcatgaactcgtttacaccctgttgagaacccggtttcaaacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaaacc 289  Q
    ||||||||||||||  |||| |||||||| || | ||| |  |||||||| || ||||||||   | ||||||   |||||||| ||||||| |||||||    
T  4630275 ttcatgaactcgttggcaccttgttgagagcctgatttgaggcgttttatcgcaacaggtgtggatccatcgacacaacctttgtacacgttcccaaacc 4630374  T
Q  290 ctccaactccaatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatg 371  Q
    |||||| ||| ||||| |||  ||  || ||||||||||| |||||||| || ||||| |||||||| ||||| ||||||||    
T  4630375 ctccaaatccgatgatgaaatcattgtcaaagttgtttgtggctgctttgatctccgcgattgtaaagtagcgacacaaatg 4630456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 90 - 373
Target Start/End: Original strand, 4666201 - 4666484
Alignment:
Q  90 catgaagtcgtaaacgagaatcatctctgcaccttcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttca 189  Q
    |||||| || ||||| |||||||||||||   | || ||||||||||| |  || || |||||||||||||| ||||| ||||||||||| ||||||||     
T  4666201 catgaactcataaaccagaatcatctctgtgtcgtcattgcaatatcccacaagggataccaagtgaatgtggcgaagctgagagagcaattcgatttcg 4666300  T
Q  190 ttcatgaactcgtttacaccctgttgagaacccggtttcaaacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaaacc 289  Q
    ||||||||||||||  |||| |||||||| || | ||| |  |||||||| || ||| ||||   | ||||||   |||||||| ||||||| |||||||    
T  4666301 ttcatgaactcgttggcaccttgttgagagcctgatttgaggcgttttatggcaacaagtgtggatccatcgacacaacctttgtacacgttgccaaacc 4666400  T
Q  290 ctccaactccaatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatggg 373  Q
    |||||||||| ||||| |||  ||| || ||||||||||| |||||| | || || || ||||||||  | |||||||||||||    
T  4666401 ctccaactccgatgatgaaatcatcgtcaaagttgtttgtggctgctctgatctctgcaattgtaaaggaccggcacaaatggg 4666484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 127 - 407
Target Start/End: Original strand, 4652823 - 4653103
Alignment:
Q  127 ttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttgagaacccggtt 226  Q
    ||||||||||| | ||| || |||||||||||||| ||||| || ||||| |||||||| |||||||||||||||||  |||| |||||||| || | ||    
T  4652823 ttgcaatatcccacgagggataccaagtgaatgtggcgaagctgggagagtaactcgatctcattcatgaactcgttggcaccttgttgagagccagatt 4652922  T
Q  227 tcaaacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaaaccctccaactccaatgataaaaatatcttcgaagttgtt 326  Q
    | |  |||||||| || |||||  |   | |||||||| |||||||| ||||||| ||||| |||||||| || ||||| |||| ||| |||||||| ||    
T  4652923 tgaggcgttttatcgcaacaggcatggatccatcgatgcaacctttgtacacgttgccaaatcctccaacaccgatgatgaaaacatcatcgaagttatt 4653022  T
Q  327 tgtagctgcttttatttccgctattgtaaaatagcggcacaaatgggatggtaaacttgaggaaccttgtttctttgtctt 407  Q
    ||| |||||||| || || || ||||| ||  |||| |||||||| | ||| |||  ||| || ||||  |||||||||||    
T  4653023 tgtggctgctttgatctctgcgattgtgaaggagcgacacaaatgtggtggcaaagatgacgaccctttgttctttgtctt 4653103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 124 - 420
Target Start/End: Original strand, 4636157 - 4636453
Alignment:
Q  124 tcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttgagaacccg 223  Q
    |||||||||||||| |  || || |||||||||||||| ||||| || |||||||||||||| || ||||||||||| ||| |||| |||||||| ||||    
T  4636157 tcgttgcaatatcccacaagggataccaagtgaatgtggcgaagctgggagagcaactcgatctcgttcatgaactcatttgcaccttgttgagagcccg 4636256  T
Q  224 gtttcaaacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaaaccctccaactccaatgataaaaatatcttcgaagtt 323  Q
       | |  |||||||| || || |||||   | |||| ||| |||||||| |||| || |||||||| ||||| || || ||      ||| ||||||||    
T  4636257 acctgaggcgttttatcgcaacgggtgtggatccatcaatgaaacctttgtacacattcccaaaccccccaacaccgataatgttttcatcatcgaagtt 4636356  T
Q  324 gtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatgggatggtaaacttgaggaaccttgtttctttgtcttccatgaagtttct 420  Q
     ||||| |||||| | || || || |||||||| ||||||||||||| |||||||||| |||| |||||||  |||||||| |||||| || |||||    
T  4636357 ttttgtggctgctctgatctctgcgattgtaaagtagcggcacaaataggatggtaaagttgacgaaccttcattctttgttttccataaactttct 4636453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 612 - 664
Target Start/End: Original strand, 4672443 - 4672495
Alignment:
Q  612 attatttttatcacttattttcaaaatctcgattccattcaacgtgacatcac 664  Q
    ||||||||||||||||| ||| ||||||||||||||||| || ||||||||||    
T  4672443 attatttttatcacttactttgaaaatctcgattccatttaatgtgacatcac 4672495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 609 - 665
Target Start/End: Complemental strand, 4712406 - 4712350
Alignment:
Q  609 gagattatttttatcacttattttcaaaatctcgattccattcaacgtgacatcacg 665  Q
    |||||||||||||||||||||||| |||||||| ||||||||||   ||||||||||    
T  4712406 gagattatttttatcacttattttgaaaatctcaattccattcattatgacatcacg 4712350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 610 - 668
Target Start/End: Original strand, 4630692 - 4630750
Alignment:
Q  610 agattatttttatcacttattttcaaaatctcgattccattcaacgtgacatcacgata 668  Q
    |||||| |||||||||||||||| |||||||| |||||||||| |  ||||||||||||    
T  4630692 agattagttttatcacttattttgaaaatctcaattccattcagcaggacatcacgata 4630750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 613 - 703
Target Start/End: Original strand, 4636631 - 4636721
Alignment:
Q  613 ttatttttatcacttattttcaaaatctcgattccattcaacgtgacatcacgatacaccgtaggcatagattttggtaatcgttgtagct 703  Q
    |||| ||||||||| ||||| ||||||||||||||||| |   | ||||||||||| || |||||||| | || |||||||||||| ||||    
T  4636631 ttatatttatcactaattttgaaaatctcgattccattaagaataacatcacgatatactgtaggcatgggttgtggtaatcgttgaagct 4636721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 613 - 653
Target Start/End: Original strand, 4643454 - 4643494
Alignment:
Q  613 ttatttttatcacttattttcaaaatctcgattccattcaa 653  Q
    |||||||| ||||||||||| ||||||||||||||||||||    
T  4643454 ttatttttgtcacttatttttaaaatctcgattccattcaa 4643494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 610 - 653
Target Start/End: Complemental strand, 4846342 - 4846299
Alignment:
Q  610 agattatttttatcacttattttcaaaatctcgattccattcaa 653  Q
    ||||| ||||||||||||| ||| ||||||||||||||||||||    
T  4846342 agattgtttttatcacttactttgaaaatctcgattccattcaa 4846299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 650
Target Start/End: Original strand, 4666703 - 4666740
Alignment:
Q  613 ttatttttatcacttattttcaaaatctcgattccatt 650  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  4666703 ttatttttgtcacttatttttaaaatctcgattccatt 4666740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 4e-46; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 55 - 373
Target Start/End: Complemental strand, 18926624 - 18926306
Alignment:
Q  55 gaaccatagagatattcacgaagagtgccacgttccatgaagtcgtaaacgagaatcatctctgcaccttcgttgcaatatccaatgagagaaaccaagt 154  Q
    |||||||| ||||| |||| |||||| ||||||| |||||| || ||||  ||||||||||||       ||||||| || || | ||| || ||||  |    
T  18926624 gaaccatatagatactcacaaagagtaccacgttgcatgaactcataaatcagaatcatctctttgttgccgttgcagtacccgacgagggataccagat 18926525  T
Q  155 gaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttgagaacccggtttcaaacgttttattgctacaggtgtacc 254  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||  | || |||||||| || ||||| | |||||||||||| || |||||       
T  18926524 gaatgtggcgaagttgagagagcaactcgatctcattcatgaactcgttggccccttgttgagagcctggtttgagacgttttattgcaacgggtgtgga 18926425  T
Q  255 ttcatcgatgtaacctttgaacacgttaccaaaccctccaactccaatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgta 354  Q
    || ||||||| |||||||  ||||||| ||||||||||||||||| ||||| |||  ||| || ||||| ||||| ||||||||||| || || ||||||    
T  18926424 tttatcgatgaaacctttatacacgttgccaaaccctccaactccgatgattaaatcatcatcaaagttatttgtggctgcttttatctctgcaattgta 18926325  T
Q  355 aaatagcggcacaaatggg 373  Q
    || ||||||||||||||||    
T  18926324 aagtagcggcacaaatggg 18926306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 613 - 661
Target Start/End: Complemental strand, 18926069 - 18926021
Alignment:
Q  613 ttatttttatcacttattttcaaaatctcgattccattcaacgtgacat 661  Q
    |||||||| ||||||||||||||||||||||| |||||||| |||||||    
T  18926069 ttatttttgtcacttattttcaaaatctcgatcccattcaatgtgacat 18926021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 123 - 242
Target Start/End: Complemental strand, 5479427 - 5479308
Alignment:
Q  123 ttcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttgagaaccc 222  Q
    ||||||||| || ||||| | |||||| |  ||||| |||||||| |  |||||||  ||||||||||| |||||||| ||| |||| ||||| ||||||    
T  5479427 ttcgttgcagtaaccaatcaaagaaacaagatgaatatgacgaagcttcgagagcatgtcgatttcattgatgaactcattttcaccttgttgtgaaccc 5479328  T
Q  223 ggtttcaaacgttttattgc 242  Q
    ||||| |  |||||||||||    
T  5479327 ggtttaagccgttttattgc 5479308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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