View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16938_low_2 (Length: 295)
Name: NF16938_low_2
Description: NF16938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16938_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 135 - 290
Target Start/End: Complemental strand, 36920850 - 36920695
Alignment:
| Q |
135 |
tttatgctgaaataataagcaactgcaacaaccaatgttttgttttaaatcttctgtttttggtgtacttgtgattgagacatattc--cctatattgag |
232 |
Q |
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| T |
36920850 |
tttatgctgaaataataagcaactgcaacaaccaatgttttgttttaaatcttctgtttttggtgtacttgtgattgagacatattcctcctatattgag |
36920751 |
T |
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| Q |
233 |
tttgtttcttatagcttaaagatagaagaacaaattcctggaccacgtaatttgtttc |
290 |
Q |
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| T |
36920750 |
tttgtttct--tagcttaaagatagaagaaaaaattcctggaccacgtaatttgtttc |
36920695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 36921005 - 36920944
Alignment:
| Q |
19 |
ttcaacacacaatatattctctatccggacacaattaatactaactttcacacttattaatt |
80 |
Q |
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| T |
36921005 |
ttcaacacacaatatattctctatccggacacaattaatactaactttcacacttattaatt |
36920944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 110
Target Start/End: Complemental strand, 36920910 - 36920876
Alignment:
| Q |
76 |
taattgagtttaaactttaaagaaatctaaacacc |
110 |
Q |
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| T |
36920910 |
taattgagtttaaactttaaagaaatctaaacacc |
36920876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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