View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16939_high_5 (Length: 254)
Name: NF16939_high_5
Description: NF16939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16939_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 33512868 - 33512639
Alignment:
| Q |
17 |
actaacattgctccatctatgcttaaacacaacatcagatatagtaatcttgtgattatgcttatgataagctttattgttagaatcacttttttctata |
116 |
Q |
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| T |
33512868 |
actaacattgctccatctatgcttaaacacaacatcagatatagtaatcttgtgattatgcttatgataagctttattgttagaatcacttttttctata |
33512769 |
T |
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| Q |
117 |
agcaattcttcttcctttgaaataatacctttttcttcttccttaaatatagtagtagcttttccaattttcctaaagctgcttccaatactaaaccttg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33512768 |
agcaattcttcttcctttgaaataatacctttttcttcttccttaaatatagtagtagcttttccaattttcctaaagctgcttccaatactaaaccttg |
33512669 |
T |
|
| Q |
217 |
atgaaccatgttgattattatcttcatctc |
246 |
Q |
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||||||||||||||||||||||||| |||| |
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| T |
33512668 |
atgaaccatgttgattattatcttcttctc |
33512639 |
T |
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