View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16939_high_9 (Length: 223)
Name: NF16939_high_9
Description: NF16939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16939_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 6825087 - 6824893
Alignment:
| Q |
16 |
caaatatctccctttcacgaaattcgattgacagaaataatcgagttcattacccttgctaatctagaaaccaacaccttgagagaaatttatataaact |
115 |
Q |
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| T |
6825087 |
caaatgtctccctttcacgaaatccgattgacagaaataatcgagttcattacccttgctaatctagaaaccaacaccttgagagaaatttatataaact |
6824988 |
T |
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| Q |
116 |
tcccaaaagagaaacgggttgatcgaagttttatttttcatgccaaaccttgcattattggatccgaagccttccactccacaccaattgatatt |
210 |
Q |
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| T |
6824987 |
tcccaaaagagaaatgggttgatcgaagttttatttttcatgccaaaccttgcattattggatccgaagccttccactccacaccatttgatatt |
6824893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 192
Target Start/End: Original strand, 6853170 - 6853343
Alignment:
| Q |
22 |
tctccctttcacgaaattcgattg----acagaaataatcgagttcattacccttgctaatctagaaaccaacacctt-gagagaaatttatataaactt |
116 |
Q |
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|||||||||||||||| |||||| | |||||||||| ||||||||||| ||||||||||| || |||||| ||| ||||| ||||||||||||||| |
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| T |
6853170 |
tctccctttcacgaaagccgattgtgacatagaaataatcaagttcattacctttgctaatctaaaagccaacatcttagagagcaatttatataaactt |
6853269 |
T |
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| Q |
117 |
cccaaaagagaaacgggttgatcgaagttttatttttcatgccaaaccttgcattattggatccgaagccttccac |
192 |
Q |
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||||||||||||| ||||||||||||||||| |||||||| ||||| |||| |||||||||| ||| |||||||| |
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| T |
6853270 |
cccaaaagagaaatgggttgatcgaagtttt-tttttcattccaaatcttg-attattggatgtgaacccttccac |
6853343 |
T |
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