View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16939_low_2 (Length: 433)
Name: NF16939_low_2
Description: NF16939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16939_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 4316486 - 4316071
Alignment:
| Q |
1 |
agggtgttgtagagggattgaaaatttggagctttggggttcagctgtgaaatggggttctgagtttaagtttaatacttctgaagaatgttgtaattct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4316486 |
agggtgttgtagagggattgaaaatttggagctttggggttcagctgtgaaatggggttccgagtttaagtttaatacttctgaagaatgttgtaattct |
4316387 |
T |
|
| Q |
101 |
tgtaaatctatgtgtactgggaaagatggaccttgtctttgtgatacttgggtcttttgtgggaatcgggaggcttgtggatccaaattcggcgaggtac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4316386 |
tgtaaatctatgtgtactgggaaagatggaccttgtctttgtgatacatgggtcttttgtgggaatcgggaggcttgtggatccaaattcggcgaggtac |
4316287 |
T |
|
| Q |
201 |
gttgcccgttcttgtccatagagacactgacgcatgtggttacattcaatcatttctaattttagtgtttaattgtcaatatagtgtcgtgtcttgtgtc |
300 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4316286 |
tttgcccgttcctgtccatagagacactgacgcatgtggttacattcaatcatttctaattttagtgtttaattgtcaatatagtgtcgtgtcttgtgtc |
4316187 |
T |
|
| Q |
301 |
tgtgtcaatcgttccaccttccatttgggtctatccttttggaattggtgttgnnnnnnncttgtttctttcctttgtatagagtttctgagctgagtca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4316186 |
tgtgtcaatcgttccaccttccatttgggtctatccttttggaattggtgttgtttttttcttgtttctttcctttgtatagagtttctgagctgagtca |
4316087 |
T |
|
| Q |
401 |
tggactagaccaagat |
416 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
4316086 |
tggactagaccaagat |
4316071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 30971447 - 30971360
Alignment:
| Q |
8 |
tgtagagggattgaaaatttggagctttggggttcagctgtgaaatggggttctgagtttaagtttaatacttctgaagaatgttgta |
95 |
Q |
| |
|
||||||||| |||| ||||||| || |||||| ||||||||||||||| ||| |||||| ||||| ||||||| |||||||||| |
|
|
| T |
30971447 |
tgtagaggggttgagcatttggaactatggggtgatgctgtgaaatggggtgatgattttaaggttaattcttctgaggaatgttgta |
30971360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University