View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16939_low_3 (Length: 426)
Name: NF16939_low_3
Description: NF16939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16939_low_3 |
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| [»] scaffold0722 (1 HSPs) |
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Alignment Details
Target: scaffold0722 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: scaffold0722
Description:
Target: scaffold0722; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 12 - 407
Target Start/End: Original strand, 2707 - 3102
Alignment:
| Q |
12 |
atgaagttgttgttggtggcggtgttttagagttgatattgaatttgaatttgaatgaatgtttggttttttggttgtattgtagtggttgagattgaag |
111 |
Q |
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| T |
2707 |
atgaagttgttgttggtggtggtgttttagagttgatattgaatttgaatttgaatgaatgtttggttttttggtagtattgtagtggttgagattgaag |
2806 |
T |
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| Q |
112 |
ttgttatgaatgaatgatgattttccaaatttcttgatgaagttgtttagagaagttgaagatttgaagttgttgtttgagatgttgaggaatttaagat |
211 |
Q |
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| T |
2807 |
ttgttatgaatgaatgatgattttccaaatttcttgatgaagttgtttagagaagttgaagatttgaagttgttgtttgagatgttgaggaatttaagat |
2906 |
T |
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| Q |
212 |
tgtttagagaaggaaaatcagacgggaaactaccattcaaagagttgtttgaaaggtttaagaaagagagtgaagtaagataagaaatgggtttgatgtt |
311 |
Q |
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| T |
2907 |
tgtttagagaaggaaaatcagacgggaaactaccattcaaagagttgtttgaaaggtttaagaaagagagtgaagtaagataagaaatgggtttgatgtt |
3006 |
T |
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| Q |
312 |
tcctatgatgttacagtttgatagatcaaggtagttgagtttggtaaggttttgaaaaccagaaggtagagtgttaagattgttgtgtgaaaggtc |
407 |
Q |
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| T |
3007 |
tcctatgatgttacagtttgatagatcaaggtagttgagtttggtaaggttttgaaaaccagaaggtagagtgttaagattgttgtgtgaaaggtc |
3102 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 263
Target Start/End: Complemental strand, 35882278 - 35882191
Alignment:
| Q |
176 |
tgaagttgttgtttgagatgttgaggaatttaagattgtttagagaaggaaaatcagacgggaaactaccattcaaagagttgtttga |
263 |
Q |
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| T |
35882278 |
tgaagttgttttgtgaaatgttgagaaatttaagattgtgaagtggaggaaaatcagaagggaaattaccagttaaagtgttgtttga |
35882191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 263
Target Start/End: Complemental strand, 24456479 - 24456392
Alignment:
| Q |
176 |
tgaagttgttgtttgagatgttgaggaatttaagattgtttagagaaggaaaatcagacgggaaactaccattcaaagagttgtttga |
263 |
Q |
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| T |
24456479 |
tgaagttgttttgtgaaatgttgagaaatttaagattgtgaagtggaggaaaatcagaagggaaattaccagttaaagtgttgtttga |
24456392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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