View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16939_low_4 (Length: 383)
Name: NF16939_low_4
Description: NF16939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16939_low_4 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 12875469 - 12875839
Alignment:
| Q |
18 |
gtttgactatggtttcgtcccggttcgagtggtttataaaagattaaccatgacctgaaggtctggttcgattttcgcattttaaaacattgcactatag |
117 |
Q |
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| T |
12875469 |
gtttgactatggtttcgtcccggttcgagtggtttataaaagattaaccatgacctgaaggtctggttcgattttcgcattttaaaacattgcactatag |
12875568 |
T |
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| Q |
118 |
tatcttacgctgattggaataatcttttatcattttatgagtttcagataatcaatatttctctcaatttatttttctttggctctaccatgattctcga |
217 |
Q |
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| T |
12875569 |
tatcttacgctgattggaataatcttttatcatttgatgagtttcagataatcaatatttctctcaatttatttttctttggctctaccatgattctcga |
12875668 |
T |
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| Q |
218 |
caatatattagaaaaccaaccgatgtagatatttgtaaagatattttaaaaattaacatacaaagtagaagtatgatg-----tgatttgatttgattcg |
312 |
Q |
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| T |
12875669 |
caatatattagaaaaccaaccgatgtagatatttgtaaagatattttaaaaattaacatacaaagtagaagtatgatgtgatttgatttgatttgattcg |
12875768 |
T |
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| Q |
313 |
atgcatatgtaaaaagttttacagtgtccgtgtatagaaattaatctcattataaattattaatccacaac |
383 |
Q |
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| T |
12875769 |
atgcatatgtaaaaagttttacagtgcccgtgtatagaaattaatctcattataaattattaatccacaac |
12875839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 45518876 - 45518840
Alignment:
| Q |
159 |
tttcagataatcaatatttctctcaatttatttttct |
195 |
Q |
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| T |
45518876 |
tttcaaataatcaatctttctctcaatttatttttct |
45518840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 10431090 - 10431128
Alignment:
| Q |
159 |
tttcagataatcaatatttctctcaatttatttttcttt |
197 |
Q |
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| T |
10431090 |
tttcaaataatcaatctttctctcaatttatttttcttt |
10431128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 273
Target Start/End: Complemental strand, 31795809 - 31795776
Alignment:
| Q |
240 |
atgtagatatttgtaaagatattttaaaaattaa |
273 |
Q |
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| T |
31795809 |
atgtagatatttgtaaagatattttataaattaa |
31795776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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