View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16939_low_5 (Length: 302)
Name: NF16939_low_5
Description: NF16939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16939_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 55180086 - 55180288
Alignment:
| Q |
16 |
gaagggataataaaaagaaaagaataggatggtcaattggtcatgatattattataaggggggaaaatgcaaaaggaataaacgacaaacaagagaagac |
115 |
Q |
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| T |
55180086 |
gaagggataataaaaagaaaagaataggatggtcaatcggtcatgatatt---ataaggggggaaaatgcaaaaggaataaacgacaaacaagagaagac |
55180182 |
T |
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| Q |
116 |
agggagaagtatgaacctaaatttggtaagcaagcatatggtttgagggtaaaaaatataagttatttccaaattaacgacttggaagaagaatcaacat |
215 |
Q |
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| T |
55180183 |
agggagaagtatgaacctaaatttggtaagcaatcatatggtttgagggtaaaaaatataagttatttccaaattaacgacttggaagaagaatcaacgt |
55180282 |
T |
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| Q |
216 |
tacatt |
221 |
Q |
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|||||| |
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| T |
55180283 |
tacatt |
55180288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 287
Target Start/End: Original strand, 55180364 - 55180398
Alignment:
| Q |
253 |
gatcaaactcatgtccaaaaaactaccaatataat |
287 |
Q |
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| T |
55180364 |
gatcaaactcatgtccaaaaaactatcaatataat |
55180398 |
T |
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