View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1693_high_1 (Length: 382)
Name: NF1693_high_1
Description: NF1693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1693_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 3 - 368
Target Start/End: Complemental strand, 8685749 - 8685382
Alignment:
| Q |
3 |
atgaatatcacagttataatatcatataactgcattcaaattgatcaacgatcattaataataaaatgaaatttcaatgatgagtttctatttttgagtt |
102 |
Q |
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| T |
8685749 |
atgaagatcacacttataatatcgtataactgcattcaaattgatcaacaatcattaataataaaatgaaatttccatgatgagtttctatttttgagtt |
8685650 |
T |
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| Q |
103 |
cagaaatatatagcttacccatctagggctttcttgttcatgctttacatgaaaatattgtgagaaatattgtggtatggagattcctaagaagaatgag |
202 |
Q |
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| T |
8685649 |
cagaaatatatagcttacccatctagggctttcttgttcatgctttacatgaaaatattgtgagaaatattttggtagggagattcctaagaagaatgag |
8685550 |
T |
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| Q |
203 |
aagcctagcacaaatttggttctaaaactgttgaggttacagaactggataaaaccaagaccagcagaagctacatagttcc-aattaacaaatattgtt |
301 |
Q |
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| T |
8685549 |
aagcctagcacaaatttggttctgaaactgttgaggttacagaactggataaaaccaagaccagcagaagctacatagttccaaattaacaaatattgtt |
8685450 |
T |
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| Q |
302 |
aagttctaatatgtatttag-aaaaaaccaaaacagcacatagattattattaatagcatgaatgaat |
368 |
Q |
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| T |
8685449 |
aagttctaatatgtatttagaaaaaaaccacaacagcacatagattattattaatagcatgaatgaat |
8685382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 119 - 279
Target Start/End: Complemental strand, 47581726 - 47581566
Alignment:
| Q |
119 |
acccatctagggctttcttgttcatgctttacatgaaaatattgtgagaaatattgtggtatggagattcctaagaagaatgagaagcctagcacaaatt |
218 |
Q |
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| T |
47581726 |
acccatctaggacctgcatgttcctgttttacttgataatattcagtgaaatattgcggtatagagacaccaatgaagaatgagaagcctaacacaaatt |
47581627 |
T |
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| Q |
219 |
tggttctaaaactgttgaggttacagaactggataaaaccaagaccagcagaagctacata |
279 |
Q |
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| T |
47581626 |
tggttctgaaactattgagattacagaactggagaaaaccaagacccgcagaagctacata |
47581566 |
T |
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