View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1693_high_6 (Length: 226)

Name: NF1693_high_6
Description: NF1693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1693_high_6
NF1693_high_6
[»] chr8 (1 HSPs)
chr8 (11-218)||(41966768-41966975)
[»] chr2 (30 HSPs)
chr2 (11-218)||(9284253-9284457)
chr2 (18-218)||(8573568-8573786)
chr2 (17-218)||(9320863-9321061)
chr2 (11-75)||(9291797-9291861)
chr2 (11-74)||(10335731-10335794)
chr2 (11-196)||(9315894-9316076)
chr2 (22-75)||(10347650-10347703)
chr2 (11-75)||(9061362-9061426)
chr2 (148-218)||(9061204-9061274)
chr2 (160-218)||(9065656-9065714)
chr2 (9-75)||(10371710-10371776)
chr2 (97-215)||(9291901-9292013)
chr2 (167-218)||(10371886-10371937)
chr2 (18-72)||(9065820-9065874)
chr2 (20-74)||(16268952-16269006)
chr2 (161-218)||(10335866-10335923)
chr2 (11-218)||(12018951-12019155)
chr2 (8-215)||(9328471-9328675)
chr2 (11-218)||(10352984-10353188)
chr2 (11-71)||(11987694-11987754)
chr2 (17-71)||(7115852-7115906)
chr2 (154-218)||(16269104-16269168)
chr2 (20-71)||(9274384-9274435)
chr2 (9-75)||(10341222-10341291)
chr2 (11-71)||(12012759-12012816)
chr2 (175-218)||(9274557-9274600)
chr2 (17-75)||(8579708-8579766)
chr2 (160-218)||(12012609-12012667)
chr2 (97-218)||(10347743-10347864)
chr2 (11-71)||(12006325-12006385)
[»] chr3 (2 HSPs)
chr3 (92-218)||(37462442-37462568)
chr3 (17-75)||(37462349-37462407)
[»] chr1 (4 HSPs)
chr1 (17-218)||(29423146-29423344)
chr1 (17-218)||(29467843-29468041)
chr1 (21-218)||(29443384-29443578)
chr1 (17-218)||(29453367-29453565)
[»] chr7 (5 HSPs)
chr7 (159-218)||(45243719-45243778)
chr7 (167-218)||(45230460-45230511)
chr7 (159-218)||(45237970-45238029)
chr7 (21-75)||(45230293-45230347)
chr7 (21-75)||(45243555-45243609)
[»] chr4 (1 HSPs)
chr4 (160-218)||(26574882-26574940)
[»] scaffold0667 (1 HSPs)
scaffold0667 (100-202)||(4432-4534)


Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 41966975 - 41966768
Alignment:
Q  11 tcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttcaaatcattaattccttgcaacagaaccttcc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41966975 tcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttcaaatcattaattccttgcaacagaaccttcc 41966876  T
Q  111 ttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccaaatatctctagagcc 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |     
T  41966875 ttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcg 41966776  T
Q  211 atattctt 218  Q
    ||||||||    
T  41966775 atattctt 41966768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 9284457 - 9284253
Alignment:
Q  11 tcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttcaaatcattaattccttgcaacagaaccttcc 110  Q
    ||||| |||||||||||||||||||||||| ||| ||| |||||||||||||||||||||| ||| |||  |  ||  ||| ||   || |||||||| |    
T  9284457 tcatccaaattaggaattccttcaacataaataacttgctcactcttcaaatcataccaaaccagcttcttacaatctatttct---aatagaaccttac 9284361  T
Q  111 ttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccaaatatctctagagcc 210  Q
    | ||||| |||||| ||||||||  || ||| |||||||||  | ||||||| |  ||||||||||||||||||| |||||||||| |||||||||| ||    
T  9284360 taccatcactagaataacctaaaggcctcaaagatttcaaacgtaaagtgaaccgtgatttaaccaaagtaaaaattttacaccaactatctctagaacc 9284261  T
Q  211 atattctt 218  Q
    ||||||||    
T  9284260 atattctt 9284253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 8573786 - 8573568
Alignment:
Q  18 aattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttc------------------aaatcattaattccttgcaa 99  Q
    ||||||||||||||||||||||| | | |||||||||||||||||||||||||||||| |||                  ||| | | |||||||| |||    
T  8573786 aattaggaattccttcaacataactgacttgttcactcttcaaatcataccaaaacagcttcctatgacatacctccgacaaaacttcaattccttccaa 8573687  T
Q  100 cagaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccaaata 199  Q
    ||||||||| |||||||| |||||| ||||||||  || | | ||||| |||  || ||||||||| |||||||| ||||||||||||||||||||| ||    
T  8573686 cagaaccttacttccatcactagaataacctaaaggcctcgaagatttaaaatgtggagtgaaacacgatttaacgaaagtaaaaagtttacaccaacta 8573587  T
Q  200 tctctagagccatattctt 218  Q
    |||||||| ||||||||||    
T  8573586 tctctagaaccatattctt 8573568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 9320863 - 9321061
Alignment:
Q  17 aaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttcaaatcattaattccttgcaacagaaccttccttccat 116  Q
    |||| ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||| |||  | |||  |  |||  ||||| ||||||  ||||||    
T  9320863 aaatcaggaattccttcaacataactaacttgtgcactcttcaaatcataccaaaacagcttctcagcatctac-cct--caacaaaaccttttttccat 9320959  T
Q  117 cgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattc 216  Q
    | || ||| ||||||||  || ||| |||||||||| | ||  | |||| |||||||||| ||||||||||||||||||| |||||||||| ||||||||    
T  9320960 cactcgaataacctaaaggcctcaaagatttcaaaggtaaatcgtaacacgatttaaccatagtaaaaagtttacaccaactatctctagaaccatattc 9321059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 9291797 - 9291861
Alignment:
Q  11 tcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacag 75  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9291797 tcatccaaattaggaattccttcaacataactaatttgttcactcttcaaatcataccaaaacag 9291861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 10335731 - 10335794
Alignment:
Q  11 tcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaaca 74  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10335731 tcatccaaattaggaattccttcaacataactaatttgttcactcttcaaatcataccaaaaca 10335794  T

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Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 9315894 - 9316076
Alignment:
Q  11 tcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttcaaatcattaattccttgcaacagaaccttcc 110  Q
    ||||| ||||||| |||||||||||||||| ||| |||||||||| |||| ||| |||||||||| |||  |  ||  ||| |   ||| |||||||| |    
T  9315894 tcatccaaattagaaattccttcaacataaataacttgttcactcatcaagtcacaccaaaacagcttcttacaatctatttc---caatagaaccttac 9315990  T
Q  111 ttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccaa 196  Q
    |||| || |||||| ||||||||  |  |||  | ||||||||| |||||||||| || |||||||||||||||||||||||||||    
T  9315991 ttccgtcactagaataacctaaaggcttcaaaaaattcaaagataaagtgaaacatgaattaaccaaagtaaaaagtttacaccaa 9316076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 10347650 - 10347703
Alignment:
Q  22 aggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacag 75  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10347650 aggaattccttcaacataactaatttgttcactcttcaaatcataccaaaacag 10347703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 9061426 - 9061362
Alignment:
Q  11 tcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacag 75  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||| | |||||||||||||||    
T  9061426 tcatcaaaattaggaattccttcaacataactaacttgttcactcttgagatcataccaaaacag 9061362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 9061274 - 9061204
Alignment:
Q  148 caaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctt 218  Q
    ||||| |||| ||||||| |||||||||||||||||||||||||||||| |||||||||| ||||| ||||    
T  9061274 caaaggtgaattgaaacacgatttaaccaaagtaaaaagtttacaccaactatctctagatccatagtctt 9061204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 9065714 - 9065656
Alignment:
Q  160 gaaacaagatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctt 218  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||    
T  9065714 gaaacaagatttgaccaaagtaaaaagtttacaccaactatctctagatccatattctt 9065656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 10371710 - 10371776
Alignment:
Q  9 catcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacag 75  Q
    ||||||| ||||||| | |||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  10371710 catcatccaaattagaatttccttcaacataactaacttgttcactcttcaaatcataccaaaacag 10371776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 97 - 215
Target Start/End: Original strand, 9291901 - 9292013
Alignment:
Q  97 caacagaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccaa 196  Q
    |||||||||||| |||||||| |||||| ||| ||||  || ||| ||||||||||      |||| |  ||||||||||||||||||||||||||||||    
T  9291901 caacagaaccttacttccatccctagaataacataaaggcctcaaagatttcaaag------tgaaccgcgatttaaccaaagtaaaaagtttacaccaa 9291994  T
Q  197 atatctctagagccatatt 215  Q
     |||||||||| |||||||    
T  9291995 ctatctctagaaccatatt 9292013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 10371886 - 10371937
Alignment:
Q  167 gatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctt 218  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  10371886 gatttaaccaaagtaaaaagtttacaccaactatctctagaaccatattctt 10371937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 9065874 - 9065820
Alignment:
Q  18 aattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaa 72  Q
    ||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||    
T  9065874 aattaggaactccttcaacataaataacttgttcactcttcaaatcataccaaaa 9065820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 16268952 - 16269006
Alignment:
Q  20 ttaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaaca 74  Q
    ||||||||||||||||||||| ||| | |||||||||||||||||||||||||||    
T  16268952 ttaggaattccttcaacataactaactcgttcactcttcaaatcataccaaaaca 16269006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 10335866 - 10335923
Alignment:
Q  161 aaacaagatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctt 218  Q
    ||||| |||||||||||||||||| ||||||||||| |||||||| ||||||||||||    
T  10335866 aaacacgatttaaccaaagtaaaatgtttacaccaactatctctacagccatattctt 10335923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 12019155 - 12018951
Alignment:
Q  11 tcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttcaaatcattaattccttgcaacagaaccttcc 110  Q
    ||||| |||||||||||||||||||||||| ||| ||| | |||||||||||||||||||| |||   || || || | || | | ||||| ||||||      
T  12019155 tcatcgaaattaggaattccttcaacataactaacttgctgactcttcaaatcataccaaaccag---catattatgatttacatccaacaaaacctttt 12019059  T
Q  111 ttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccaaatatctctagagcc 210  Q
    ||||||| || ||| ||||||||   | |||  || | |||| | ||  |||||| ||||  | |||||||||||||||||||||| |||||||| | ||    
T  12019058 ttccatcactcgaataacctaaagggctcaaaaatctaaaaggtaaaacgaaacacgattccatcaaagtaaaaagtttacaccaactatctctacatcc 12018959  T
Q  211 atattctt 218  Q
    ||||||||    
T  12018958 atattctt 12018951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 9328471 - 9328675
Alignment:
Q  8 acatcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttcaaatcattaattccttgcaacagaacct 107  Q
    |||||||  |||| ||||||||||||||||||| ||| |||| ||||| | ||||||||| ||||||| |||  |  ||  |  |||  ||||| |||||    
T  9328471 acatcatggaaatcaggaattccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagcttctcaaaatccac-cct--caacaaaacct 9328567  T
Q  108 tccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccaaatatctctaga 207  Q
    |  ||||||| ||  || ||||||||  || ||| |||||||||| | ||  |||||| |||||||||| ||||||||||||||||||| |||||||| |    
T  9328568 tttttccatcactcaaataacctaaaggcctcaaagatttcaaaggtaaatggaaacacgatttaaccatagtaaaaagtttacaccaactatctctata 9328667  T
Q  208 gccatatt 215  Q
     |||||||    
T  9328668 tccatatt 9328675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 10352984 - 10353188
Alignment:
Q  11 tcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttcaaatcattaattccttgcaacagaaccttcc 110  Q
    ||||| |||||| ||||| ||| ||||||| ||| ||||| ||||| ||||||||||||||| || |||  | |||  |  |||  ||||| ||||||      
T  10352984 tcatccaaattaagaatttcttgaacataactaacttgtttactctccaaatcataccaaaatagattctcaacatctac-cct--caacaaaacctttt 10353080  T
Q  111 ttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccaaatatctctagagcc 210  Q
    ||| ||| || ||| ||||||||| || ||| |||| ||||| | ||  |||| |||||||||||| ||||||||||||||||||| | |||||| | ||    
T  10353081 ttctatcactcgaataacctaaaagcctcaaagattgcaaaggtaaatcgaaagaagatttaaccacagtaaaaagtttacaccaactctctctacatcc 10353180  T
Q  211 atattctt 218  Q
    ||||||||    
T  10353181 atattctt 10353188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 11987754 - 11987694
Alignment:
Q  11 tcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaa 71  Q
    ||||| || ||||||||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  11987754 tcatcgaatttaggaattccgtcaacataactaaattgttcactcttcaaatcataccaaa 11987694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 7115906 - 7115852
Alignment:
Q  17 aaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaa 71  Q
    ||||||||||||||||||||| || ||| |||||| |||||||||||||||||||    
T  7115906 aaattaggaattccttcaacacaactaacttgttcgctcttcaaatcataccaaa 7115852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 16269104 - 16269168
Alignment:
Q  154 tgaagtgaaacaagatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctt 218  Q
    |||||||||||| ||||||||||| ||||||||||| |||||| |||||||| | ||||| ||||    
T  16269104 tgaagtgaaacacgatttaaccaaggtaaaaagtttgcaccaactatctctatatccatactctt 16269168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 9274384 - 9274435
Alignment:
Q  20 ttaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaa 71  Q
    ||||||||||||| |||| || ||| ||||||||||||||||||||||||||    
T  9274384 ttaggaattcctttaacaaaactaacttgttcactcttcaaatcataccaaa 9274435  T

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Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 10341222 - 10341291
Alignment:
Q  9 catcatcaaaattaggaattccttcaacataag---taatttgttcactcttcaaatcataccaaaacag 75  Q
    ||||||| |||| |||||||||||||||||||    ||| ||||||||||| ||||||||||||||||||    
T  10341222 catcatccaaatcaggaattccttcaacataataactaacttgttcactctccaaatcataccaaaacag 10341291  T

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Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 12012816 - 12012759
Alignment:
Q  11 tcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaa 71  Q
    ||||| |||||||||||||||||||||||| ||| |||   ||||||||||||||||||||    
T  12012816 tcatcgaaattaggaattccttcaacataactaacttg---actcttcaaatcataccaaa 12012759  T

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Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 9274557 - 9274600
Alignment:
Q  175 caaagtaaaaagtttacaccaaatatctctagagccatattctt 218  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||    
T  9274557 caaagtaaaaagtttacaccaactatctgtagaaccatattctt 9274600  T

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Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 8579766 - 8579708
Alignment:
Q  17 aaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacag 75  Q
    |||||||||||||||| |||| |||||| || |||||| || | |||||||||||||||    
T  8579766 aaattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacag 8579708  T

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Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 12012667 - 12012609
Alignment:
Q  160 gaaacaagatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctt 218  Q
    |||||| ||||  |||||||||||||||||||||||| ||||| || | ||||||||||    
T  12012667 gaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctt 12012609  T

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Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 218
Target Start/End: Original strand, 10347743 - 10347864
Alignment:
Q  97 caacagaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccaa 196  Q
    |||||||||||| |||||||| |||||| ||| ||    || |||  ||||||||| | ||  |||||| || | | ||| |||||||||||||||||||    
T  10347743 caacagaaccttacttccatcactagaataacatatgggcctcaacaatttcaaaggtaaatcgaaacacgactcagccatagtaaaaagtttacaccaa 10347842  T
Q  197 atatctctagagccatattctt 218  Q
     |||||||| | ||||||||||    
T  10347843 ctatctctacatccatattctt 10347864  T

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Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 12006385 - 12006325
Alignment:
Q  11 tcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaa 71  Q
    ||||| ||||| |||||||| ||||  ||| ||| || |||||||||||||||||||||||    
T  12006385 tcatcgaaatttggaattccctcaatgtaattaacttcttcactcttcaaatcataccaaa 12006325  T

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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 92 - 218
Target Start/End: Original strand, 37462442 - 37462568
Alignment:
Q  92 ccttgcaacagaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttac 191  Q
    |||| ||||| |||||| |||||||| |||||| ||| ||||  || ||| |||||||||| |||||||||||| |||||| ||| |||| |||||||||    
T  37462442 ccttccaacaaaaccttacttccatcactagaataacataaaggcctcaaagatttcaaaggtgaagtgaaacacgatttatccacagtacaaagtttac 37462541  T
Q  192 accaaatatctctagagccatattctt 218  Q
    ||||| |||||||||| ||||||||||    
T  37462542 accaactatctctagatccatattctt 37462568  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 37462349 - 37462407
Alignment:
Q  17 aaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacag 75  Q
    |||||||||| |||||||| |||| ||| ||||||||||||| ||||||||||||||||    
T  37462349 aaattaggaactccttcaatataactaacttgttcactcttccaatcataccaaaacag 37462407  T

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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 29423146 - 29423344
Alignment:
Q  17 aaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttcaaatcattaattccttgcaacagaaccttccttccat 116  Q
    |||||||||||||||| |||| || ||| |||||||||||| | ||||||||||||||| |||   |||  |  | |||||||||||||| | | |||||    
T  29423146 aaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaaaacagcttc---tcaggatctacttgcaacagaaccatacctccat 29423242  T
Q  117 cgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattc 216  Q
    |||| ||| || |||||| || ||| | |||||||| | | |||||||| ||||   ||||||||||||||||||||||  |||||||| | ||||||||    
T  29423243 cgctcgaataagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgattctgccaaagtaaaaagtttacaccagctatctctacatccatattc 29423342  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 29468041 - 29467843
Alignment:
Q  17 aaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttcaaatcattaattccttgcaacagaaccttccttccat 116  Q
    |||||||||||||||||||||||| |||  ||||||||||| | ||||||||||||||  |||   ||||    | |||  ||||||||| | |||||||    
T  29468041 aaattaggaattccttcaacataattaacatgttcactcttgagatcataccaaaacaacttc---tcatggtctacttcaaacagaaccatacttccat 29467945  T
Q  117 cgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattc 216  Q
    |||| ||| ||||||||  || ||| |||| |||   | |||||||||| ||| ||||||||||||||||||||| |||| |||||||| | ||||||||    
T  29467944 cgctcgaataacctaaaggcctcaaagattccaactgtaaagtgaaacacgatctaaccaaagtaaaaagtttacgccaactatctctacatccatattc 29467845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 218
Target Start/End: Complemental strand, 29443578 - 29443384
Alignment:
Q  21 taggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttcaaatcattaattccttgcaacagaaccttccttccatcgct 120  Q
    |||||||||||||||||||| |||    ||||||||| | ||||||||||||||| |||   |||  |  | |||||||||||||| | |||| ||||||    
T  29443578 taggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttc---tcacgatctacttgcaacagaaccatacttctatcgct 29443482  T
Q  121 agaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctt 218  Q
     ||| ||||||||| || ||| | | |||||| | || ||||||| |||| | ||||||||||||||||||||||  |||||||| | ||||||||||    
T  29443481 cgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacaccagctatctctacatccatattctt 29443384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 29453565 - 29453367
Alignment:
Q  17 aaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacagtttcaaatcattaattccttgcaacagaaccttccttccat 116  Q
    ||||||||||||||||||||| || ||| |||||||||||| | ||||||||||||||| |||   |||  |  | ||| |||||||||| | |||||||    
T  29453565 aaattaggaattccttcaacacaactaacttgttcactcttgagatcataccaaaacagcttc---tcacaatctacttccaacagaaccatacttccat 29453469  T
Q  117 cgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattc 216  Q
    |||| ||| || |||||  || ||| | |||||||| | || ||||||| ||||   ||||||||||||||| ||||||  |||||||| | ||||||||    
T  29453468 cgctcgaataagctaaaggccacaaagttttcaaaggtaaaatgaaacatgattccgccaaagtaaaaagttcacaccagctatctctacatccatattc 29453369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 45243719 - 45243778
Alignment:
Q  159 tgaaacaagatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctt 218  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  45243719 tgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagaaccatattctt 45243778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 45230460 - 45230511
Alignment:
Q  167 gatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctt 218  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  45230460 gatttaaccaaagtaaaaagtttacaccaactatctctagaaccatattctt 45230511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 45237970 - 45238029
Alignment:
Q  159 tgaaacaagatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctt 218  Q
    ||||||| |||| ||| ||||||||||||||||||||| |||||||||| ||||||||||    
T  45237970 tgaaacacgattcaactaaagtaaaaagtttacaccaactatctctagatccatattctt 45238029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 45230293 - 45230347
Alignment:
Q  21 taggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacag 75  Q
    |||||||||||| ||||| ||||| |||||||||||| |||||||||||||||||    
T  45230293 taggaattccttgaacatgagtaacttgttcactcttgaaatcataccaaaacag 45230347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 45243555 - 45243609
Alignment:
Q  21 taggaattccttcaacataagtaatttgttcactcttcaaatcataccaaaacag 75  Q
    |||||||||||| ||||||||||| ||||||||| || | |||||||||||||||    
T  45243555 taggaattccttgaacataagtaagttgttcactgttgagatcataccaaaacag 45243609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 26574882 - 26574940
Alignment:
Q  160 gaaacaagatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctt 218  Q
    |||||| |||||||||| ||||||||||||||||||| |||||||| | ||||||||||    
T  26574882 gaaacacgatttaaccacagtaaaaagtttacaccaactatctctacatccatattctt 26574940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 202
Target Start/End: Original strand, 4432 - 4534
Alignment:
Q  100 cagaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagtttacaccaaata 199  Q
    ||||||||| |||||||| |||||| ||| ||||   | | | |||||||||  |||||||| ||| ||||| | || ||||||||||||||||||| ||    
T  4432 cagaaccttacttccatcactagaataacataaaggactcgaagatttcaaatgtgaagtgacacacgatttcatcatagtaaaaagtttacaccaacta 4531  T
Q  200 tct 202  Q
    |||    
T  4532 tct 4534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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