View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1693_low_1 (Length: 442)
Name: NF1693_low_1
Description: NF1693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1693_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 127 - 425
Target Start/End: Complemental strand, 14929711 - 14929421
Alignment:
| Q |
127 |
aattaattaagccccaacgtaccatctacagagtcaaattaaaaaattggggtactagaacataacctttgagactattcttctacattagtaagtagta |
226 |
Q |
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| T |
14929711 |
aattaattaagccccaacgtaccatctacagagtcaaatgaaaaaattggggtactagaacataacctttgagactattcttctacattagta---agta |
14929615 |
T |
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| Q |
227 |
atatcatcatccattttatacgaatcatatgttgctaacaaaaattc---caacccaagaaatacacataaatttggtcactattgagtaccaagtagta |
323 |
Q |
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| T |
14929614 |
atatcatcatccattttatacgaatcatatgttgctaacaaaaattccaacaacccaagaaatacacataaatttggtcactattgagtaccaagtagta |
14929515 |
T |
|
| Q |
324 |
tctttcattttatatagtcatatactacattttcccctaaacatacccctcatttgactaaataacaagagttaagaaactggcagtcttttcaccaaaa |
423 |
Q |
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| T |
14929514 |
tctttcatttt--------atatactacattttcccctaaatatacccctcatttgactaaataacaagagttaagaaaccggcagtcttttcaccaaaa |
14929423 |
T |
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