View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1693_low_5 (Length: 329)
Name: NF1693_low_5
Description: NF1693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1693_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 309
Target Start/End: Original strand, 40333898 - 40334194
Alignment:
| Q |
13 |
tggaggaatggaaaaaatcactagacaatttgagacattcaacagctcaatggcagatgttcctcagttttagagggacagatactcgctactcttttac |
112 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40333898 |
tggaggaatgggaaaaatcactacacaatttgagacattcaacagctcaatggcagatgtttctcagttttagaggggaagatactcgctactcttttac |
40333997 |
T |
|
| Q |
113 |
aggtagtctttttcaagctttatgtcaagggggattcaagactttcatggatgatgaaggactgcacactggagaccgagtttcaccttctcttagaaat |
212 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
40333998 |
aggtagtctttttcaagctttatcccaagggggattcaagactttcatggatgatgaaggactgcacactggggaccgagtttcaccttgtcttagaaat |
40334097 |
T |
|
| Q |
213 |
gcaatcgaagcatcaagactttcggttattgttttgtctgaaaactatgcaagttccccatggtgccttgatgaacttgtgaaaattcttgaatgta |
309 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
40334098 |
gcaattgaagcatcaagactttcgattattgttttgtctgaaaactatgcaaattccacatggtgtcttgatgaacttgtgaagattcttgaatgta |
40334194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 9 - 309
Target Start/End: Original strand, 40387172 - 40387472
Alignment:
| Q |
9 |
ccaatggaggaatggaaaaaatcactagacaatttgagacattcaacagctcaatggcagatgttcctcagttttagagggacagatactcgctactctt |
108 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
40387172 |
ccaatggaggaatgggaaaaatcactagacaatttgagacattcaactgctcaatgggagatgtttctcagttttagaggggaagatactcgctactctt |
40387271 |
T |
|
| Q |
109 |
ttacaggtagtctttttcaagctttatgtcaagggggattcaagactttcatggatgatgaaggactgcacactggagaccgagtttcaccttctcttag |
208 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
40387272 |
ttacaggtagtctttttcaagctttatcccaagggggattcaagactttcatggatgatgaaggactgcacactggggaccgagtttcaccttgtcttag |
40387371 |
T |
|
| Q |
209 |
aaatgcaatcgaagcatcaagactttcggttattgttttgtctgaaaactatgcaagttccccatggtgccttgatgaacttgtgaaaattcttgaatgt |
308 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
40387372 |
aaatgcaattgaagcatcaagactttcgattattgttttgtctgaaaactatgcaaattccacatggtgtcttgatgaacttgtgaagattcttgaatgt |
40387471 |
T |
|
| Q |
309 |
a |
309 |
Q |
| |
|
| |
|
|
| T |
40387472 |
a |
40387472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 13 - 309
Target Start/End: Original strand, 40376931 - 40377227
Alignment:
| Q |
13 |
tggaggaatggaaaaaatcactagacaatttgagacattcaacagctcaatggcagatgttcctcagttttagagggacagatactcgctactcttttac |
112 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
40376931 |
tggaagaatgggaaaaatcactagacaatttgagacattcaacggatcaatggcagatgttcctcagttttagagggggggatactcgctactcctttac |
40377030 |
T |
|
| Q |
113 |
aggtagtctttttcaagctttatgtcaagggggattcaagactttcatggatgatgaaggactgcacactggagaccgagtttcaccttctcttagaaat |
212 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||| ||||||| ||||| |
|
|
| T |
40377031 |
aggtagtctttttcaagctttatcccaagggggattcaagattttcatggatgataaaggattgcacactggagaccgaatttcacattctcttcgaaat |
40377130 |
T |
|
| Q |
213 |
gcaatcgaagcatcaagactttcggttattgttttgtctgaaaactatgcaagttccccatggtgccttgatgaacttgtgaaaattcttgaatgta |
309 |
Q |
| |
|
||||| |||||| |||||||||| ||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
40377131 |
gcaattgaagcaacaagactttcaattattgttttgtctgaaaactatgcaaattccacatggtgtcttgatgaacttgtgaagattcttgaatgta |
40377227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 9 - 299
Target Start/End: Complemental strand, 40597806 - 40597516
Alignment:
| Q |
9 |
ccaatggaggaatggaaaaaatcactagacaatttgagacattcaacagctcaatggcagatgttcctcagttttagagggacagatactcgctactctt |
108 |
Q |
| |
|
||||| |||||||||||| ||||||||| | | |||||||||||| || ||||||| || ||| | ||||||||||| |||||| |||||||||| |
|
|
| T |
40597806 |
ccaattgaggaatggaaagcatcactagatagtctgagacattcaatggccaaatggcaaattttcttaagttttagaggagaagatacacgctactctt |
40597707 |
T |
|
| Q |
109 |
ttacaggtagtctttttcaagctttatgtcaagggggattcaagactttcatggatgatgaaggactgcacactggagaccgagtttcaccttctcttag |
208 |
Q |
| |
|
||||||||| ||| | | |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||||||| ||||| |
|
|
| T |
40597706 |
ttacaggtaatctgtataaagctttatgtcaagggggattcaagaccttcatggatgatggaggactgcacactggagacaaaatttcacccactcttct |
40597607 |
T |
|
| Q |
209 |
aaatgcaatcgaagcatcaagactttcggttattgttttgtctgaaaactatgcaagttccccatggtgccttgatgaacttgtgaaaatt |
299 |
Q |
| |
|
||||||||| |||| |||||| || ||| |||| ||||||||||||||||||| | |||| ||||||| ||||| |||||||| |||||| |
|
|
| T |
40597606 |
aaatgcaattgaagaatcaaggctgtcgattatcattttgtctgaaaactatgcgaattcctcatggtgtcttgaagaacttgtcaaaatt |
40597516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 72 - 315
Target Start/End: Original strand, 40277836 - 40278079
Alignment:
| Q |
72 |
ttcctcagttttagagggacagatactcgctactcttttacaggtagtctttttcaagctttatgtcaagggggattcaagactttcatggatgatgaag |
171 |
Q |
| |
|
||||||||||||||||||| |||||| ||| || | ||||||||| ||||| ||| |||||| ||| || ||||| || ||| | |||| ||| | |
|
|
| T |
40277836 |
ttcctcagttttagagggatagatacccgcgacacatttacaggttctctttatcatgctttagaccaaatggaattcacaaccttctttgatggtgatg |
40277935 |
T |
|
| Q |
172 |
gactgcacactggagaccgagtttcaccttctcttagaaatgcaatcgaagcatcaagactttcggttattgttttgtctgaaaactatgcaagttcccc |
271 |
Q |
| |
|
| || ||||||||||||| | ||||||| ||||| |||| |||| |||||| |||| ||||| || ||||||||||||||||||||||||||||| | |
|
|
| T |
40277936 |
gcctacacactggagaccaaatttcaccaactcttttaaattcaattgaagcagcaaggctttcaattgttgttttgtctgaaaactatgcaagttccac |
40278035 |
T |
|
| Q |
272 |
atggtgccttgatgaacttgtgaaaattcttgaatgtagaaaat |
315 |
Q |
| |
|
|||||| |||||||||||||| || |||||||||||||| |||| |
|
|
| T |
40278036 |
atggtgtcttgatgaacttgtcaagattcttgaatgtaggaaat |
40278079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 291
Target Start/End: Original strand, 40303441 - 40303714
Alignment:
| Q |
13 |
tggaggaatggaaaaaatcactagacaatttgagacattcaacagctcaatggcagatgttcctcagttttagagggacagatactcgctactcttttac |
112 |
Q |
| |
|
||||||| |||||| |||| |||||||||||| | ||||| |||| ||||||||| ||| ||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
40303441 |
tggaggagtggaaagaatcttcagacaatttgaggcgttcaatggctcgatggcagattttcatcagttttagaggagaagatactcggtactcttttac |
40303540 |
T |
|
| Q |
113 |
aggtagtctttttcaagctttatgtcaagggggattcaagactttcatggatgatgaaggactgcacactggagaccgagtttcaccttctcttagaaat |
212 |
Q |
| |
|
||| ||| | | | ||| | |||| || |||||||| || ||||||||| ||| ||| |||| | ||| |||| | ||||||| ||||||| ||| |
|
|
| T |
40303541 |
gggttttctctatgatgctctctgtcgagaaggattcaaaacattcatggattatgggggattgcatattggggaccaaatttcaccctctcttattaat |
40303640 |
T |
|
| Q |
213 |
gcaatcgaagcatcaagactttcggttattgttttgtctgaaaactatgcaagttccccatggtgccttgatgaacttg |
291 |
Q |
| |
|
|||||||||| |||||| || |||||||||||||||| |||||||||||| |||||| |||||||| |||| |
|
|
| T |
40303641 |
t-----gaagcatcaaagctttcgattgttgttttgtctgaaaattatgcaagttcctaatggtgtcttgatgagcttg |
40303714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 210 - 317
Target Start/End: Complemental strand, 40256946 - 40256838
Alignment:
| Q |
210 |
aatgcaatcgaagcatcaagactttcggttattgttttgtctgaaaactatgcaagttccccatggtgccttgatgaacttgtgaaaattcttgaatgta |
309 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||||||| || ||||||| |||| ||| ||||||| || ||||||||||| || |||||||| |||| |
|
|
| T |
40256946 |
aatgcaattgaagcatcaaggctttccattattgttttatccgaaaactttgcatattcatcatggtgtctcgatgaacttgttaagattcttgagtgta |
40256847 |
T |
|
| Q |
310 |
-gaaaatga |
317 |
Q |
| |
|
|||||||| |
|
|
| T |
40256846 |
tgaaaatga |
40256838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 169
Target Start/End: Original strand, 40283447 - 40283555
Alignment:
| Q |
61 |
aatggcagatgttcctcagttttagagggacagatactcgctactcttttacaggtagtctttttcaagctttatgtcaagggggattcaagactttcat |
160 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||| | |||||||||||| ||| | | | ||||| || | | ||| |||||||| ||||| |
|
|
| T |
40283447 |
aatggcagattttcctcagttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgctttgtgccgggaggggttcaagaccttcat |
40283546 |
T |
|
| Q |
161 |
ggatgatga |
169 |
Q |
| |
|
||||||||| |
|
|
| T |
40283547 |
ggatgatga |
40283555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 292
Target Start/End: Original strand, 40409211 - 40409279
Alignment:
| Q |
224 |
atcaagactttcggttattgttttgtctgaaaactatgcaagttccccatggtgccttgatgaacttgt |
292 |
Q |
| |
|
|||||| ||||| || |||||||||||||||||| || | |||| ||||||| |||||||||||||| |
|
|
| T |
40409211 |
atcaaggctttcaattgttgttttgtctgaaaactttggatattccacatggtgtcttgatgaacttgt |
40409279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University