View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1694-Insertion-1 (Length: 377)

Name: NF1694-Insertion-1
Description: NF1694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1694-Insertion-1
NF1694-Insertion-1
[»] chr5 (2 HSPs)
chr5 (38-377)||(3280238-3280577)
chr5 (207-269)||(6126873-6126935)
[»] chr1 (2 HSPs)
chr1 (160-269)||(17556755-17556864)
chr1 (207-269)||(26471084-26471146)
[»] chr8 (4 HSPs)
chr8 (205-244)||(3236383-3236422)
chr8 (207-269)||(32211382-32211444)
chr8 (204-269)||(8587216-8587281)
chr8 (221-269)||(7012234-7012282)
[»] chr7 (4 HSPs)
chr7 (207-269)||(4790297-4790359)
chr7 (221-269)||(9575472-9575520)
chr7 (204-252)||(18102936-18102984)
chr7 (221-269)||(28536770-28536818)
[»] chr6 (2 HSPs)
chr6 (207-269)||(35031020-35031082)
chr6 (206-250)||(9220600-9220644)
[»] chr4 (4 HSPs)
chr4 (207-269)||(41615695-41615757)
chr4 (168-269)||(41594665-41594765)
chr4 (177-245)||(43541890-43541956)
chr4 (204-272)||(51531517-51531585)
[»] chr3 (2 HSPs)
chr3 (207-269)||(33942951-33943013)
chr3 (207-269)||(51406722-51406784)
[»] chr2 (4 HSPs)
chr2 (207-269)||(13344533-13344595)
chr2 (206-252)||(41526301-41526347)
chr2 (218-246)||(10061625-10061653)
chr2 (221-269)||(41492915-41492963)


Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 38 - 377
Target Start/End: Original strand, 3280238 - 3280577
Alignment:
Q  38 cgtatcactcaaccaacaccgacatgattattgattgaatcaagttaaaagtaattcttttatttcgtgggaaaaagctagaaaactatttattagtaat 137  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3280238 cgtatcactcaactaacaccgacatgattattgattgaatcaagttcaaagtaattcttttatttcgtgggaaaaagctagaaaactatttattagtaat 3280337  T
Q  138 ttagtacggcataacttcctaatccctcttgtcccatatataagttaaagttggatcaataaaattttgatgtacttggtctaaatttttaactagatac 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||    
T  3280338 ttagtacggcataacttcctaatccctcttgtcccatatataagttaaatttggatcaataaaattctcatgtacttggtctaaatttttaactagatac 3280437  T
Q  238 atcaattttgtttgatccaactttctcttatatatctaagggggagaaactatcttgaatgtatgcaataaaattcacaattgtgtgtcagtgtaaatta 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3280438 atcaattttgtttgatccaactttctcttatatatctaagggggagaaactatcttgaatgtatgcaataaaattcacaattgtgtgtcagtgtaaatta 3280537  T
Q  338 ctagtataagtaaaggggcagcacttactaattttaatga 377  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3280538 ctagtataagtaaaggggcagcacttactaattttaatga 3280577  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 6126873 - 6126935
Alignment:
Q  207 atgtacttggtctaaatttttaactagatacatcaattttgtttgatccaactttctcttata 269  Q
    ||||| |||| ||||||||||||||||||||||||| |||  |||| ||||  ||||||||||    
T  6126873 atgtatttggactaaatttttaactagatacatcaacttttgttgacccaaaattctcttata 6126935  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 269
Target Start/End: Original strand, 17556755 - 17556864
Alignment:
Q  160 tccctcttgtcccatatataagttaaagttggatcaataaaattttgatgtacttggtctaaatttttaactagatacatcaattttgtttgatccaact 259  Q
    ||||||| |||| || ||||||  |||||| | |||| |||| ||  ||||| |||| || |||||||||||||||||||||| |||  |||| |||| |    
T  17556755 tccctctggtcctatttataagagaaagttaggtcaacaaaagttaaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaagt 17556854  T
Q  260 ttctcttata 269  Q
    ||||||||||    
T  17556855 ttctcttata 17556864  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 269
Target Start/End: Complemental strand, 26471146 - 26471084
Alignment:
Q  207 atgtacttggtctaaatttttaactagatacatcaattttgtttgatccaactttctcttata 269  Q
    ||||| |||| || |||||||||||||||||||||| |||  |||||||||  ||||||||||    
T  26471146 atgtatttggactgaatttttaactagatacatcaacttttgttgatccaaaattctcttata 26471084  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 244
Target Start/End: Complemental strand, 3236422 - 3236383
Alignment:
Q  205 tgatgtacttggtctaaatttttaactagatacatcaatt 244  Q
    ||||||| |||||||||||||| |||||||||||||||||    
T  3236422 tgatgtatttggtctaaattttaaactagatacatcaatt 3236383  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 269
Target Start/End: Complemental strand, 32211444 - 32211382
Alignment:
Q  207 atgtacttggtctaaatttttaactagatacatcaattttgtttgatccaactttctcttata 269  Q
    ||||| |||| || ||||||||||||||||||||||||||  |||| ||||  ||||||||||    
T  32211444 atgtatttggactgaatttttaactagatacatcaatttttgttgacccaaaattctcttata 32211382  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 269
Target Start/End: Original strand, 8587216 - 8587281
Alignment:
Q  204 ttgatgtacttggtctaaatttttaactagatacatcaattttgtttgatccaactttctcttata 269  Q
    |||||||| || | ||||||||||||||||||||||||| |||  ||||  ||| |||||||||||    
T  8587216 ttgatgtattttgactaaatttttaactagatacatcaacttttattgactcaagtttctcttata 8587281  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 269
Target Start/End: Original strand, 7012234 - 7012282
Alignment:
Q  221 aatttttaactagatacatcaattttgtttgatccaactttctcttata 269  Q
    |||||||||||||||||||||| |||  |||||||||  ||||||||||    
T  7012234 aatttttaactagatacatcaacttttgttgatccaaaattctcttata 7012282  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 4790297 - 4790359
Alignment:
Q  207 atgtacttggtctaaatttttaactagatacatcaattttgtttgatccaactttctcttata 269  Q
    ||||| |||| ||||||||||||||||||||||||| |||  |||| ||||  ||||||||||    
T  4790297 atgtatttggactaaatttttaactagatacatcaacttttattgacccaaaattctcttata 4790359  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 269
Target Start/End: Original strand, 9575472 - 9575520
Alignment:
Q  221 aatttttaactagatacatcaattttgtttgatccaactttctcttata 269  Q
    |||||||||||||||||||||| |||  |||| | ||||||||||||||    
T  9575472 aatttttaactagatacatcaagttttgttgaccaaactttctcttata 9575520  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 18102984 - 18102936
Alignment:
Q  204 ttgatgtacttggtctaaatttttaactagatacatcaattttgtttga 252  Q
    |||||||| |||||  ||||||||||||| ||||||| |||||||||||    
T  18102984 ttgatgtatttggttcaaatttttaactaaatacatcgattttgtttga 18102936  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 28536818 - 28536770
Alignment:
Q  221 aatttttaactagatacatcaattttgtttgatccaactttctcttata 269  Q
    |||||||||||||||||||||| |||  |||||||||  ||||||||||    
T  28536818 aatttttaactagatacatcaacttttattgatccaaaattctcttata 28536770  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 269
Target Start/End: Complemental strand, 35031082 - 35031020
Alignment:
Q  207 atgtacttggtctaaatttttaactagatacatcaattttgtttgatccaactttctcttata 269  Q
    ||||| |||| || ||||||||||||||||||||||||||  |||| ||||  ||||||||||    
T  35031082 atgtatttggactgaatttttaactagatacatcaatttttgttgacccaaaattctcttata 35031020  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 9220644 - 9220600
Alignment:
Q  206 gatgtacttggtctaaatttttaactagatacatcaattttgttt 250  Q
    |||||| ||||| ||| |||||||||||||||||||| |||||||    
T  9220644 gatgtatttggtttaactttttaactagatacatcaactttgttt 9220600  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 269
Target Start/End: Complemental strand, 41615757 - 41615695
Alignment:
Q  207 atgtacttggtctaaatttttaactagatacatcaattttgtttgatccaactttctcttata 269  Q
    ||||| |||| || |||||||||||| ||||||||| |||  ||||||||| |||||||||||    
T  41615757 atgtatttggacttaatttttaactaaatacatcaacttttgttgatccaattttctcttata 41615695  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 269
Target Start/End: Original strand, 41594665 - 41594765
Alignment:
Q  168 gtcccatatataagttaaagttggatcaataaaattttgatgtacttggtctaaatttttaactagatacatcaattttgtttgatccaactttctctta 267  Q
    |||||| |||||||  |||||||| |||| |||| || ||||||  ||||| ||||||| ||| ||||||||||| ||   |||| ||||||||||||||    
T  41594665 gtcccacatataagagaaagttgggtcaacaaaagtt-gatgtatatggtccaaattttgaaccagatacatcaacttaagttgacccaactttctctta 41594763  T
Q  268 ta 269  Q
    ||    
T  41594764 ta 41594765  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 43541956 - 43541890
Alignment:
Q  177 ataagttaaagttggatcaataaaattttgatgtacttggtctaaatttttaactagatacatcaattt 245  Q
    ||||| |||||||||||||| ||||||  |||||| |||||| ||||||| ||| | ||||||||||||    
T  43541956 ataagataaagttggatcaacaaaatt--gatgtatttggtccaaattttaaacgaaatacatcaattt 43541890  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 51531517 - 51531585
Alignment:
Q  204 ttgatgtacttggtctaaatttttaactagatacatcaattttgtttgatccaactttctcttatatat 272  Q
    |||||||| |||||| ||||||| ||| ||||||||  |||||  || ||| |||||||||||||||||    
T  51531517 ttgatgtatttggtccaaattttgaacaagatacattcatttttattaatcaaactttctcttatatat 51531585  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 269
Target Start/End: Complemental strand, 33943013 - 33942951
Alignment:
Q  207 atgtacttggtctaaatttttaactagatacatcaattttgtttgatccaactttctcttata 269  Q
    ||||| |||| || |||||||||||||||||||||| |||  |||| |||| |||||||||||    
T  33943013 atgtatttggactgaatttttaactagatacatcaacttttgttgacccaagtttctcttata 33942951  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 51406722 - 51406784
Alignment:
Q  207 atgtacttggtctaaatttttaactagatacatcaattttgtttgatccaactttctcttata 269  Q
    ||||| |||| || ||||||||||||||||||||||||||  |||| ||||  ||||||||||    
T  51406722 atgtatttggactgaatttttaactagatacatcaatttttgttgacccaaaattctcttata 51406784  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 13344533 - 13344595
Alignment:
Q  207 atgtacttggtctaaatttttaactagatacatcaattttgtttgatccaactttctcttata 269  Q
    ||||| |||| || |||||||||||||||||||||| |||  |||||||||  ||||||||||    
T  13344533 atgtatttggactgaatttttaactagatacatcaacttttgttgatccaaaattctcttata 13344595  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 41526301 - 41526347
Alignment:
Q  206 gatgtacttggtctaaatttttaactagatacatcaattttgtttga 252  Q
    |||||| ||| ||||||||||||||||||||||| ||||| ||||||    
T  41526301 gatgtatttgatctaaatttttaactagatacattaatttcgtttga 41526347  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 10061653 - 10061625
Alignment:
Q  218 ctaaatttttaactagatacatcaatttt 246  Q
    |||||||||||||||||||||||||||||    
T  10061653 ctaaatttttaactagatacatcaatttt 10061625  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 41492963 - 41492915
Alignment:
Q  221 aatttttaactagatacatcaattttgtttgatccaactttctcttata 269  Q
    |||||||||||||||||||||| |||  |||| |||| |||||||||||    
T  41492963 aatttttaactagatacatcaacttttgttgacccaaatttctcttata 41492915  T

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