View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1694-Insertion-2 (Length: 292)

Name: NF1694-Insertion-2
Description: NF1694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1694-Insertion-2
NF1694-Insertion-2
[»] chr6 (35 HSPs)
chr6 (8-186)||(3573984-3574163)
chr6 (111-234)||(6943464-6943587)
chr6 (111-242)||(17250059-17250190)
chr6 (111-242)||(27233273-27233404)
chr6 (111-242)||(30912408-30912539)
chr6 (111-235)||(17543743-17543867)
chr6 (111-242)||(15528106-15528237)
chr6 (111-242)||(23897813-23897944)
chr6 (111-242)||(26053292-26053423)
chr6 (111-242)||(26073345-26073476)
chr6 (111-234)||(7918385-7918508)
chr6 (112-241)||(2912245-2912373)
chr6 (111-242)||(7223521-7223645)
chr6 (113-235)||(10509026-10509148)
chr6 (111-242)||(17103204-17103328)
chr6 (118-242)||(19748342-19748466)
chr6 (118-242)||(22498881-22499005)
chr6 (111-235)||(11327574-11327698)
chr6 (155-242)||(21354786-21354873)
chr6 (227-291)||(3573918-3573982)
chr6 (118-201)||(18491074-18491157)
chr6 (111-188)||(5422798-5422875)
chr6 (148-211)||(4841946-4842009)
chr6 (137-201)||(18490998-18491062)
chr6 (111-186)||(10958239-10958314)
chr6 (240-273)||(4841873-4841906)
chr6 (207-235)||(7918250-7918278)
chr6 (111-171)||(12245111-12245171)
chr6 (207-235)||(17103396-17103424)
chr6 (207-235)||(17543630-17543658)
chr6 (207-235)||(19748534-19748562)
chr6 (207-235)||(22498340-22498368)
chr6 (207-235)||(26053196-26053224)
chr6 (207-235)||(26073249-26073277)
chr6 (209-241)||(33593057-33593089)
[»] chr4 (26 HSPs)
chr4 (111-282)||(8011172-8011343)
chr4 (111-242)||(5361959-5362090)
chr4 (111-242)||(17466081-17466212)
chr4 (111-242)||(36120826-36120957)
chr4 (118-242)||(8889237-8889361)
chr4 (111-242)||(9770114-9770245)
chr4 (131-242)||(9911407-9911518)
chr4 (111-242)||(13551618-13551749)
chr4 (111-241)||(13023569-13023702)
chr4 (111-242)||(10142901-10143032)
chr4 (111-213)||(7044729-7044831)
chr4 (111-242)||(37240264-37240390)
chr4 (111-242)||(23064959-23065090)
chr4 (111-212)||(4156765-4156866)
chr4 (113-213)||(7815561-7815661)
chr4 (111-242)||(5375666-5375797)
chr4 (111-213)||(18459733-18459835)
chr4 (111-202)||(24719519-24719610)
chr4 (111-213)||(7452422-7452523)
chr4 (113-188)||(6347114-6347189)
chr4 (118-174)||(46664421-46664477)
chr4 (207-242)||(4157053-4157088)
chr4 (240-291)||(6347011-6347062)
chr4 (242-291)||(4156906-4156955)
chr4 (208-245)||(5361855-5361892)
chr4 (207-235)||(36121024-36121052)
[»] chr2 (24 HSPs)
chr2 (111-291)||(25539173-25539353)
chr2 (148-291)||(19491896-19492033)
chr2 (111-242)||(31237973-31238104)
chr2 (111-235)||(23863324-23863448)
chr2 (111-242)||(1404785-1404916)
chr2 (111-242)||(35565950-35566081)
chr2 (111-241)||(31578007-31578136)
chr2 (118-245)||(15588843-15588969)
chr2 (111-242)||(36429850-36429981)
chr2 (154-242)||(30432464-30432552)
chr2 (111-215)||(1690785-1690889)
chr2 (111-235)||(20063716-20063840)
chr2 (111-208)||(16766712-16766809)
chr2 (111-211)||(17995057-17995157)
chr2 (148-211)||(31023262-31023325)
chr2 (111-187)||(15516610-15516686)
chr2 (136-212)||(34841583-34841659)
chr2 (111-212)||(5395674-5395775)
chr2 (246-282)||(27406848-27406884)
chr2 (207-242)||(13502566-13502601)
chr2 (111-212)||(8428144-8428245)
chr2 (111-188)||(19245155-19245232)
chr2 (207-235)||(15588754-15588782)
chr2 (209-241)||(34841784-34841816)
[»] chr8 (27 HSPs)
chr8 (113-241)||(3094250-3094378)
chr8 (111-235)||(15294672-15294796)
chr8 (111-235)||(15475041-15475165)
chr8 (111-227)||(17646995-17647111)
chr8 (111-242)||(11879602-11879733)
chr8 (111-242)||(11897018-11897149)
chr8 (111-242)||(19704451-19704583)
chr8 (111-234)||(5922051-5922174)
chr8 (124-242)||(22910198-22910316)
chr8 (113-242)||(31424167-31424296)
chr8 (111-240)||(45403031-45403160)
chr8 (148-242)||(29384313-29384406)
chr8 (148-245)||(6810861-6810957)
chr8 (158-242)||(23142224-23142308)
chr8 (113-229)||(6292351-6292467)
chr8 (111-235)||(27836467-27836591)
chr8 (198-242)||(9212251-9212295)
chr8 (129-242)||(7489279-7489393)
chr8 (126-188)||(24056618-24056680)
chr8 (171-241)||(32424394-32424464)
chr8 (111-184)||(477101-477174)
chr8 (159-235)||(15231774-15231850)
chr8 (111-211)||(15761466-15761566)
chr8 (207-243)||(19704349-19704385)
chr8 (207-242)||(29384205-29384240)
chr8 (207-235)||(15761258-15761286)
chr8 (207-235)||(17647198-17647226)
[»] chr1 (28 HSPs)
chr1 (129-291)||(17055946-17056108)
chr1 (111-242)||(23528658-23528789)
chr1 (111-242)||(9955031-9955162)
chr1 (111-242)||(19009942-19010073)
chr1 (111-235)||(41032673-41032797)
chr1 (111-242)||(9327211-9327342)
chr1 (111-242)||(12513283-12513414)
chr1 (111-235)||(21846271-21846395)
chr1 (111-242)||(13276262-13276393)
chr1 (111-233)||(25146773-25146895)
chr1 (111-242)||(9352059-9352190)
chr1 (113-235)||(13100195-13100317)
chr1 (111-233)||(18304815-18304938)
chr1 (111-242)||(42180061-42180192)
chr1 (126-241)||(16125452-16125570)
chr1 (111-242)||(9128836-9128967)
chr1 (111-242)||(17869746-17869872)
chr1 (111-184)||(30619077-30619150)
chr1 (111-213)||(18337547-18337648)
chr1 (111-196)||(12800623-12800708)
chr1 (111-195)||(14074413-14074497)
chr1 (111-175)||(34478833-34478897)
chr1 (207-242)||(13100391-13100426)
chr1 (186-242)||(18228278-18228333)
chr1 (198-242)||(32881416-32881460)
chr1 (124-213)||(8772719-8772809)
chr1 (207-235)||(18304711-18304739)
chr1 (207-235)||(23528857-23528885)
[»] chr3 (34 HSPs)
chr3 (111-291)||(24649635-24649816)
chr3 (111-242)||(29067286-29067417)
chr3 (111-242)||(20756041-20756172)
chr3 (111-242)||(28745772-28745903)
chr3 (116-234)||(21963436-21963554)
chr3 (116-234)||(21985872-21985990)
chr3 (126-235)||(30727694-30727803)
chr3 (111-242)||(3449288-3449418)
chr3 (111-242)||(8156126-8156258)
chr3 (112-242)||(39427905-39428035)
chr3 (118-242)||(17064330-17064454)
chr3 (111-234)||(22137280-22137403)
chr3 (111-242)||(24620196-24620330)
chr3 (148-235)||(22494784-22494871)
chr3 (123-213)||(15806531-15806621)
chr3 (118-242)||(22356048-22356173)
chr3 (111-213)||(27676358-27676460)
chr3 (111-188)||(28135724-28135801)
chr3 (111-203)||(17796379-17796471)
chr3 (111-203)||(19104819-19104911)
chr3 (182-242)||(42696920-42696980)
chr3 (162-213)||(10872971-10873022)
chr3 (111-242)||(25870363-25870503)
chr3 (111-213)||(13005929-13006031)
chr3 (113-203)||(17796272-17796362)
chr3 (113-203)||(19104712-19104802)
chr3 (111-203)||(17796488-17796580)
chr3 (111-203)||(19104928-19105020)
chr3 (209-241)||(6861033-6861065)
chr3 (207-235)||(20756223-20756251)
chr3 (207-235)||(25870222-25870250)
chr3 (207-235)||(28745977-28746005)
chr3 (207-235)||(29067478-29067506)
chr3 (207-235)||(39428104-39428132)
[»] chr7 (34 HSPs)
chr7 (111-242)||(26281306-26281436)
chr7 (111-249)||(22687653-22687791)
chr7 (111-242)||(5058531-5058662)
chr7 (111-242)||(8346529-8346660)
chr7 (111-242)||(24990067-24990198)
chr7 (111-242)||(27221420-27221551)
chr7 (111-235)||(11326388-11326512)
chr7 (118-233)||(8571252-8571367)
chr7 (111-235)||(44944848-44944976)
chr7 (130-242)||(8343796-8343908)
chr7 (111-235)||(14055253-14055377)
chr7 (111-235)||(14365281-14365405)
chr7 (111-242)||(4247358-4247489)
chr7 (111-242)||(5715292-5715422)
chr7 (126-235)||(39182277-39182385)
chr7 (111-242)||(9685240-9685371)
chr7 (111-242)||(24725473-24725604)
chr7 (111-241)||(8330042-8330172)
chr7 (111-242)||(7730339-7730469)
chr7 (164-242)||(1977707-1977785)
chr7 (118-242)||(11324988-11325111)
chr7 (113-242)||(17811355-17811480)
chr7 (111-231)||(21846433-21846552)
chr7 (114-242)||(27509939-27510067)
chr7 (118-235)||(26617475-26617596)
chr7 (119-212)||(21157800-21157893)
chr7 (179-251)||(20570872-20570944)
chr7 (111-213)||(26565653-26565755)
chr7 (126-182)||(4574488-4574544)
chr7 (207-242)||(4247557-4247592)
chr7 (167-195)||(8630001-8630029)
chr7 (207-235)||(17811549-17811577)
chr7 (207-235)||(24725372-24725400)
chr7 (207-235)||(24989673-24989701)
[»] chr5 (22 HSPs)
chr5 (111-242)||(19578944-19579075)
chr5 (111-242)||(18843717-18843848)
chr5 (111-234)||(20923720-20923843)
chr5 (111-242)||(43234870-43235001)
chr5 (111-242)||(18051526-18051657)
chr5 (111-235)||(22645722-22645846)
chr5 (118-242)||(27340182-27340306)
chr5 (111-242)||(21059152-21059282)
chr5 (111-241)||(23172425-23172559)
chr5 (111-242)||(38158250-38158381)
chr5 (127-242)||(41688661-41688775)
chr5 (158-242)||(19979648-19979732)
chr5 (158-240)||(20320992-20321074)
chr5 (111-183)||(19042444-19042516)
chr5 (242-276)||(26021408-26021442)
chr5 (129-182)||(24106661-24106714)
chr5 (207-235)||(18843916-18843944)
chr5 (207-235)||(19579144-19579172)
chr5 (207-235)||(20321144-20321172)
chr5 (207-235)||(21059057-21059085)
chr5 (111-143)||(24647941-24647973)
chr5 (240-276)||(43005904-43005940)
[»] scaffold0186 (2 HSPs)
scaffold0186 (111-242)||(8445-8576)
scaffold0186 (207-235)||(8642-8670)
[»] scaffold0417 (1 HSPs)
scaffold0417 (111-242)||(7451-7582)
[»] scaffold0510 (1 HSPs)
scaffold0510 (111-235)||(103-228)
[»] scaffold0042 (2 HSPs)
scaffold0042 (111-242)||(93702-93831)
scaffold0042 (207-241)||(93599-93633)
[»] scaffold0048 (3 HSPs)
scaffold0048 (111-211)||(48816-48915)
scaffold0048 (153-211)||(61410-61468)
scaffold0048 (240-276)||(48740-48776)
[»] scaffold0036 (1 HSPs)
scaffold0036 (111-213)||(37191-37293)
[»] scaffold0115 (1 HSPs)
scaffold0115 (111-194)||(35103-35186)
[»] scaffold0603 (2 HSPs)
scaffold0603 (111-209)||(9049-9147)
scaffold0603 (207-235)||(8859-8887)
[»] scaffold0017 (1 HSPs)
scaffold0017 (167-212)||(128985-129031)
[»] scaffold0016 (1 HSPs)
scaffold0016 (207-235)||(56325-56353)


Alignment Details
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 3574163 - 3573984
Alignment:
Q  8 gattgattcaaattgtaagaaatttgaactctttaaacaagtgctcacgagttcgatagagaaaatt-ggatgaaaagagagaacacatcttatgtattt 106  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  3574163 gattgattcaaattgtaagaattttggactctttaaacaagtgctcacaagttcgatagagaaaattcggatgaaaagagagaacatatcttatgtattt 3574064  T
Q  107 tcggtgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccat 186  Q
    | |||||| | |||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3574063 ttggtgttttcaaaattccgacttaaattctaaaatccagaatttcgcgactttcttcaccttcaacgactcaaatccat 3573984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 111 - 234
Target Start/End: Complemental strand, 6943587 - 6943464
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||  ||||||  |||||    
T  6943587 tgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcaccttcaacgactcaaatcgatagtagaatctcaaaatagacaaaa 6943488  T
Q  211 tccatcgattttgattgcgatttt 234  Q
    | ||||||||||||||||||||||    
T  6943487 ttcatcgattttgattgcgatttt 6943464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 17250059 - 17250190
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||||||||| |||||||||||| |||||| ||| |||| || |||||||||||||||||||||| ||||||||| |||||||| |||||| ||||||    
T  17250059 tgttgttaaaatcccgacttaaatcctaaaatccaggattttgcaactttcttcaccttcaacgacttaaatccatactagaatcccaaaataggcaaaa 17250158  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    | ||| ||||||||||||||||||| ||||||    
T  17250159 ttcattgattttgattgcgattttacgatttc 17250190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 27233404 - 27233273
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||| | |||||||||||| |||||| ||| |||| | ||||||||||||||||||||||| |||||||||||||||||| ||||||  |||||    
T  27233404 tgttgtcaaactaccgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaacgacttaaatccatagtagaatcccaaaatagacaaaa 27233305  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||||||||||||||||||| ||||||    
T  27233304 tccatcgattttgattgcgattttatgatttc 27233273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 30912539 - 30912408
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| || ||||||||| ||||||| || |||| ||||||||||||||||||||||||||||||||||| |||||||  |||||| ||||||    
T  30912539 tgttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcaacgactcaaatccataatagaatcacaaaataggcaaaa 30912440  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    ||||| ||||||||||||||||||| ||||||    
T  30912439 tccatagattttgattgcgattttacgatttc 30912408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 17543867 - 17543743
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| |||||  ||||||||||| |||||||||| |||| |||||||| ||||| ||||||||||||||||||||||||||||  |||||||||||||    
T  17543867 tgttgtcaaaatctcgacttaaatcctaaaattcaggattttgcgacttttttcactttcaacgactcaaatccatagtagaatcttaaaataagcaaaa 17543768  T
Q  211 tccatcgattttgattgcgatttta 235  Q
    || || |||||||||||||||||||    
T  17543767 tctatggattttgattgcgatttta 17543743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 15528237 - 15528106
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||| |||||||||| |||| ||||||||||||||||| ||||||| |||| ||||||||||||  ||||||  |||||    
T  15528237 tgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcacctttaacgacttaaattcatagtagaatcttaaaatagacaaaa 15528138  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||||| ||||||||||||| ||||||    
T  15528137 tccatcgatttcgattgcgattttacgatttc 15528106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 23897813 - 23897944
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    ||||| ||| || |||||||||||| |||||| ||| |||| |||||||||||||| ||||||||||||||||||||||| ||| | |||||| || |||    
T  23897813 tgttgataagatcccgacttaaatcctaaaatgcaggattttgcgactttcttcacgttcaacgactcaaatccatagtaaaattctaaaataggcgaaa 23897912  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||||||||||||||||||| ||||||    
T  23897913 tccatcgattttgattgcgattttacgatttc 23897944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 26053423 - 26053292
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||||||||||  || |||| |||||||||||||||||||| ||||||||| |||| |||||||| |||||||||||||    
T  26053423 tgttgtcaaaatcccgacttaaatcttaaaatctaggattttgcgactttcttcaccttcaatgactcaaattcataatagaatcccaaaataagcaaaa 26053324  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    |||||| ||||||||||  |||||| ||||||    
T  26053323 tccatcaattttgattgtcattttacgatttc 26053292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 26073476 - 26073345
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||||||||||  || |||| |||||||||||||||||||| ||||||||| |||| |||||||| |||||||||||||    
T  26073476 tgttgtcaaaatcccgacttaaatcttaaaatctaggattttgcgactttcttcaccttcaatgactcaaattcataatagaatcccaaaataagcaaaa 26073377  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    |||||| ||||||||||  |||||| ||||||    
T  26073376 tccatcaattttgattgtcattttacgatttc 26073345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 111 - 234
Target Start/End: Complemental strand, 7918508 - 7918385
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||  |||||||||| |||| |||||||| |||||||||||||||| |||||||||||| ||||| || ||||||||||    
T  7918508 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgacttttttcaccttcaacgacttaaatccatagtaaaatcctaacataagcaaaa 7918409  T
Q  211 tccatcgattttgattgcgatttt 234  Q
    || |||||||||||||| ||||||    
T  7918408 tcaatcgattttgattgggatttt 7918385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 112 - 241
Target Start/End: Complemental strand, 2912373 - 2912245
Alignment:
Q  112 gttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaat 211  Q
    ||||| ||||| |||||||||||||||||||| || |||| || ||||||| || ||||||||| ||||||| |||||||||||  ||||||||||||||    
T  2912373 gttgtcaaaatcccgacttaaatcttaaaatttaggattttgcaactttctccatcttcaacgattcaaatc-atagtagaatcttaaaataagcaaaat 2912275  T
Q  212 ccatcgattttgattgcgattttaagattt 241  Q
     |||||||||||||||| |||||| |||||    
T  2912274 tcatcgattttgattgcaattttacgattt 2912245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 7223521 - 7223645
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||| ||||||| || |||| ||||||||||||||||       || |||||||||||||||| | |||||||||||||    
T  7223521 tgttgtcaaaatcccgacttaaatcctaaaatttaggattttgcgactttcttcacct-------cttaaatccatagtagaattccaaaataagcaaaa 7223613  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||||||||||||||||||| ||||||    
T  7223614 tccatcgattttgattgcgattttacgatttc 7223645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 113 - 235
Target Start/End: Complemental strand, 10509148 - 10509026
Alignment:
Q  113 ttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatc 212  Q
    |||| ||||| | |||||||||| |||||||||||| || | |||||||||||| ||||| |||||||||  |||||||||||| |||||| |||||||     
T  10509148 ttgtcaaaatccagacttaaatcctaaaattcagaaatttgtgactttcttcacattcaatgactcaaatttatagtagaatcccaaaataggcaaaatt 10509049  T
Q  213 catcgattttgattgcgatttta 235  Q
    |||||||||||||| ||||||||    
T  10509048 catcgattttgattacgatttta 10509026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 17103204 - 17103328
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| ||||||||||||||||||||||| |||| |||||       || ||||||||||||||| ||||||||||||| ||||||  |||||    
T  17103204 tgttgtcaaaatcccgacttaaatcttaaaattcaggattttgcgac-------actttcaacgactcaaatgcatagtagaatcccaaaatagacaaaa 17103296  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    |||||||||||||||| |||||||| ||||||    
T  17103297 tccatcgattttgattacgattttacgatttc 17103328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 118 - 242
Target Start/End: Original strand, 19748342 - 19748466
Alignment:
Q  118 aaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccatcg 217  Q
    ||||| ||||||||||||||| ||| ||| |||| | || |||||||||||| || ||||||||||| ||||||||||  |||||| ||||||| |||||    
T  19748342 aaaatcccgacttaaatcttacaatccaggattttgagattttcttcacctttaatgactcaaatccgtagtagaatcttaaaataggcaaaattcatcg 19748441  T
Q  218 attttgattgcgattttaagatttc 242  Q
    |||||||||| ||||||| ||||||    
T  19748442 attttgattgtgattttacgatttc 19748466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 118 - 242
Target Start/End: Complemental strand, 22499005 - 22498881
Alignment:
Q  118 aaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccatcg 217  Q
    ||||| || ||| ||||| |||| | || ||||| ||||||||||||||||| |||||||||||||||||||| ||||  ||||||  ||||||||||||    
T  22499005 aaaatcccaactaaaatcctaaattccacaattttgcgactttcttcaccttgaacgactcaaatccatagtacaatctcaaaatagacaaaatccatcg 22498906  T
Q  218 attttgattgcgattttaagatttc 242  Q
    ||||| ||||| |||||| ||||||    
T  22498905 attttaattgcaattttacgatttc 22498881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 11327698 - 11327574
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||| | |||||| ||   ||| |||  |||||||| |||||| |||| |||||||||||||||||| |||||| ||||||    
T  11327698 tgttgtcaaaatcccgacttaaaacctaaaatccaaggttttgcggttttcttcatcttcaaggacttaaatccatagtagaatcccaaaataggcaaaa 11327599  T
Q  211 tccatcgattttgattgcgatttta 235  Q
    | |||||||||| ||||||||||||    
T  11327598 ttcatcgattttaattgcgatttta 11327574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 21354786 - 21354873
Alignment:
Q  155 gactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||| ||||||||||||| |||||||| ||||||||| ||||||  |||||||||||| |||| |||||||||||| ||||||    
T  21354786 gactttctttaccttcaacgacttaaatccatggtagaatcccaaaatagacaaaatccatcgttttttattgcgattttacgatttc 21354873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 3573982 - 3573918
Alignment:
Q  227 gcgattttaagatttcatacaaaatcgcatgattttaaagggttttgaagagttttttccatttt 291  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||||||| |||||||||||||    
T  3573982 gcgattttaagatttcaaacaaaattgcatgatgttaaagggttttgaagaattttttccatttt 3573918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 18491157 - 18491074
Alignment:
Q  118 aaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaa 201  Q
    ||||| |||||||||||| |||||| |||||||| ||  |||| ||||||||||||||||||||||||||| ||||||| ||||    
T  18491157 aaaatcccgacttaaatcctaaaatccagaattttgcatctttattcaccttcaacgactcaaatccatagcagaatcccaaaa 18491074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 5422875 - 5422798
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatag 188  Q
    |||||| ||||| |||||||||||  |||||||||  |||| || ||||| |||||||||||||||||||||| ||||    
T  5422875 tgttgtcaaaatcccgacttaaatactaaaattcatgattttgcaactttattcaccttcaacgactcaaatctatag 5422798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 4842009 - 4841946
Alignment:
Q  148 atttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaat 211  Q
    |||| |||||||| ||||||||||||||||||||||| ||| ||||||| | |||| |||||||    
T  4842009 attttgcgactttattcaccttcaacgactcaaatccgtagcagaatcccataataggcaaaat 4841946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 18491062 - 18490998
Alignment:
Q  137 taaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaa 201  Q
    |||||| ||| |||| || ||||| ||||||||||| ||||||||||||||| ||||||| ||||    
T  18491062 taaaatccagcattttgcaactttattcaccttcaatgactcaaatccatagcagaatcctaaaa 18490998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 10958314 - 10958239
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccat 186  Q
    |||||| |||||  |||||||||||| ||||||||| |||| |||||||   |||||||||| || ||||||||||    
T  10958314 tgttgtcaaaatcgcgacttaaatctcaaaattcaggattttgcgacttgactcaccttcaaggattcaaatccat 10958239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 273
Target Start/End: Complemental strand, 4841906 - 4841873
Alignment:
Q  240 ttcatacaaaatcgcatgattttaaagggttttg 273  Q
    ||||||||| ||||||||||||||||||||||||    
T  4841906 ttcatacaagatcgcatgattttaaagggttttg 4841873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Complemental strand, 7918278 - 7918250
Alignment:
Q  207 aaaatccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||||||    
T  7918278 aaaatccatcgattttgattgcgatttta 7918250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 12245111 - 12245171
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttca 171  Q
    ||||||||||||   || |||||||||||||||||| |||| |||||||| ||||| ||||    
T  12245111 tgttgttaaaatcatgatttaaatcttaaaattcagtattttgcgactttattcactttca 12245171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 17103396 - 17103424
Alignment:
Q  207 aaaatccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||||||    
T  17103396 aaaatccatcgattttgattgcgatttta 17103424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Complemental strand, 17543658 - 17543630
Alignment:
Q  207 aaaatccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||||||    
T  17543658 aaaatccatcgattttgattgcgatttta 17543630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 19748534 - 19748562
Alignment:
Q  207 aaaatccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||||||    
T  19748534 aaaatccatcgattttgattgcgatttta 19748562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Complemental strand, 22498368 - 22498340
Alignment:
Q  207 aaaatccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||||||    
T  22498368 aaaatccatcgattttgattgcgatttta 22498340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Complemental strand, 26053224 - 26053196
Alignment:
Q  207 aaaatccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||||||    
T  26053224 aaaatccatcgattttgattgcgatttta 26053196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Complemental strand, 26073277 - 26073249
Alignment:
Q  207 aaaatccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||||||    
T  26073277 aaaatccatcgattttgattgcgatttta 26073249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 33593089 - 33593057
Alignment:
Q  209 aatccatcgattttgattgcgattttaagattt 241  Q
    ||||||||||||||||||||||||||| |||||    
T  33593089 aatccatcgattttgattgcgattttatgattt 33593057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 111 - 282
Target Start/End: Complemental strand, 8011343 - 8011172
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| || ||| ||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  8011343 tgttgtcaaaatcccaactcaaatcctaaaattcaggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaatgagcaaaa 8011244  T
Q  211 tccatcgattttgattgcgattttaagatttcatacaaaatcgcatgattttaaagggttttgaagagtttt 282  Q
    | ||||||||||||||||||||||  ||||||| ||||||||||| ||||||||||||||||||||| ||||    
T  8011243 ttcatcgattttgattgcgattttgcgatttcaaacaaaatcgcaggattttaaagggttttgaagaatttt 8011172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 5362090 - 5361959
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||| |||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| | |||||| ||||||    
T  5362090 tgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcatcttcaacgactcaaatccatagtagaattccaaaataggcaaaa 5361991  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
     |||||||||||||||| ||||||| ||||||    
T  5361990 cccatcgattttgattgagattttacgatttc 5361959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 17466081 - 17466212
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| |||||||| ||||||||||||||||| || |||| |||| |||||||| ||| || |||||||||||||| |||||||| |||||||||||||    
T  17466081 tgttgtcaaaattccaacttaaatcttaaaatttaggattttgcgattttcttcatctttaaggactcaaatccataatagaatcctaaaataagcaaaa 17466180  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||||| ||||||||||||| ||||||    
T  17466181 tccatcgatttagattgcgattttacgatttc 17466212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 36120826 - 36120957
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| |||||||||| |||||| |||||||| || |||| |||| |||||||||||||||||||| ||||||||| || ||| | |||||||||||||    
T  36120826 tgttgtcaaaattccgatttaaattttaaaatttaggattttgcgattttcttcaccttcaacgacttaaatccataataaaattctaaaataagcaaaa 36120925  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    | ||||||||||||||||||||||| ||||||    
T  36120926 ttcatcgattttgattgcgattttacgatttc 36120957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 118 - 242
Target Start/End: Original strand, 8889237 - 8889361
Alignment:
Q  118 aaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccatcg 217  Q
    ||||| |||||||||||| |||||| ||| |||| | || |||||||||| |||||||||||||| |||| |||||||| |||||| ||||||| |||||    
T  8889237 aaaatcccgacttaaatcctaaaatccaggattttgtgaatttcttcaccatcaacgactcaaattcataatagaatcccaaaataggcaaaattcatcg 8889336  T
Q  218 attttgattgcgattttaagatttc 242  Q
    |||||||||||||||||| ||||||    
T  8889337 attttgattgcgattttacgatttc 8889361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 9770114 - 9770245
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    ||||||||||||  ||||||||||  ||||||  || |||| | |||||| ||||||||||||||||||||||||||||||||||| ||||||  |||||    
T  9770114 tgttgttaaaatctcgacttaaattctaaaatctaggattttgtgacttttttcaccttcaacgactcaaatccatagtagaatcctaaaatagacaaaa 9770213  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    || ||| |||||||||||||||||| ||||||    
T  9770214 tctatcaattttgattgcgattttacgatttc 9770245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 131 - 242
Target Start/End: Complemental strand, 9911518 - 9911407
Alignment:
Q  131 aaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccatcgattttgattgcga 230  Q
    ||||| |||||||||  |||| || ||||||||||||||||||| |  |||||||||||||||||| |||||  ||||||||||||||||||||||||||    
T  9911518 aaatcctaaaattcaagattttgcaactttcttcaccttcaacggcctaaatccatagtagaatcctaaaattggcaaaatccatcgattttgattgcga 9911419  T
Q  231 ttttaagatttc 242  Q
    ||||| ||||||    
T  9911418 ttttacgatttc 9911407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 13551749 - 13551618
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| |||||  ||||||| ||| ||||||| || |||| |||||||| |||||||||||||||||||||||||| ||||||   ||||||  |||||    
T  13551749 tgttgtcaaaatctcgacttatatcctaaaatttaggattttgcgacttttttcaccttcaacgactcaaatccatattagaatttcaaaatagacaaaa 13551650  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    |||||||||||| |||||||||||| ||||||    
T  13551649 tccatcgattttaattgcgattttatgatttc 13551618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 241
Target Start/End: Original strand, 13023569 - 13023702
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaa-ttcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatcc--aaaaataagca 207  Q
    |||||| ||||| || ||||||||| ||||| || || |||| |||||||||||||||||||| |||||||||||||||||||||||  |||||||   |    
T  13023569 tgttgtcaaaatcccaacttaaatcctaaaaatttaggattttgcgactttcttcaccttcaatgactcaaatccatagtagaatcccaaaaaatagata 13023668  T
Q  208 aaatccatcgattttgattgcgattttaagattt 241  Q
    ||||| |||||||||||||||||||||| |||||    
T  13023669 aaatcaatcgattttgattgcgattttacgattt 13023702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 10142901 - 10143032
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||  ||||||| |  |||| |||||||||| ||||||||| ||||||| ||||||||| ||| | ||||||  |||||    
T  10142901 tgttgtgaaaatcccgacttaaattctaaaatttaatattttgcgactttctccaccttcaatgactcaagtccatagtataattccaaaatagacaaaa 10143000  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||||||||||| ||||||| ||||||    
T  10143001 tccatcgattttgattgtgattttacgatttc 10143032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 111 - 213
Target Start/End: Original strand, 7044729 - 7044831
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||| |||||| ||  |||| || ||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  7044729 tgttgtcaaaatcccgacttaaatcctaaaatccatgattttgcaactttattcaccttcaacgactcaaatccatagcagaatcccaaaataagcaaaa 7044828  T
Q  211 tcc 213  Q
    |||    
T  7044829 tcc 7044831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 37240264 - 37240390
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||||||||| || ||||||||| ||||||| ||    |  ||||||| |||||||||||||||||||||||||||||||| || |||||| ||| ||    
T  37240264 tgttgttaaaatccctacttaaatcctaaaatttag----ttacgacttttttcaccttcaacgactcaaatccatagtagaa-cccaaaataggcataa 37240358  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    | ||||||||||||||||||||||| ||||||    
T  37240359 ttcatcgattttgattgcgattttacgatttc 37240390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 23065090 - 23064959
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||||||||  |||||||||||  |||||| ||| |||| |  ||||||||||| ||||||||||||||||||| ||||||| | |||||| |  |||    
T  23065090 tgttgttaaaaccccgacttaaattctaaaatccagtattttgtaactttcttcacattcaacgactcaaatccattgtagaattctaaaataggtcaaa 23064991  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    |||||||||||| ||||| |||||| ||||||    
T  23064990 tccatcgattttaattgcaattttacgatttc 23064959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 111 - 212
Target Start/End: Original strand, 4156765 - 4156866
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||||||||||| || ||||   |||||| |||||||| |||||||||||||  ||||||||||| |||||||||||||    
T  4156765 tgttgtcaaaatcccgacttaaatcttaaaatttaggattttatgactttattcacctttaacgactcaaatctgtagtagaatcctaaaataagcaaaa 4156864  T
Q  211 tc 212  Q
    ||    
T  4156865 tc 4156866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 113 - 213
Target Start/End: Original strand, 7815561 - 7815661
Alignment:
Q  113 ttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatc 212  Q
    |||||||||| |||||||||||| |||||| ||| |||| | |||||| |||| ||| | ||||||||| |||||||||||||| |||||| ||||||||    
T  7815561 ttgttaaaatcccgacttaaatcctaaaatacagcattttgtgactttattcagcttaagcgactcaaacccatagtagaatcccaaaataggcaaaatc 7815660  T
Q  213 c 213  Q
    |    
T  7815661 c 7815661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 5375666 - 5375797
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| || || |||||  ||||||| |  |||| ||||||||||||||||||||||||| |||| |||| ||||||   ||||||  |||||    
T  5375666 tgttgtcaaaatcccaacctaaattctaaaatttaagattttgcgactttcttcaccttcaacgactaaaattcataatagaattttaaaatagacaaaa 5375765  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    | |||||| |||||||||||||||| ||||||    
T  5375766 ttcatcgactttgattgcgattttacgatttc 5375797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 18459835 - 18459733
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||| ||||| |||||| ||  |||| |||||| | ||||| ||||||||||||||||||||| ||||||| |||||| ||||||    
T  18459835 tgttgtaaaaatcccgactaaaatcctaaaatccaagattttgcgactgtattcactttcaacgactcaaatccatagcagaatcctaaaataggcaaaa 18459736  T
Q  211 tcc 213  Q
    |||    
T  18459735 tcc 18459733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 202
Target Start/End: Original strand, 24719519 - 24719610
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaat 202  Q
    |||||| |||||  |||||||| |  |||||||||  |||| |||||||| ||||||||||||||||||||||||||| ||||||| |||||    
T  24719519 tgttgtcaaaatctcgacttaatttctaaaattcaagattttgcgactttattcaccttcaacgactcaaatccatagcagaatcctaaaat 24719610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 213
Target Start/End: Original strand, 7452422 - 7452523
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||  |||||| |||||||| || ||||| ||||||||||||||||| |||||||||| || ||| || ||| ||||||    
T  7452422 tgttgtgaaaatcccgacttaaattctaaaatccagaattttgcaactttattcaccttcaacgactc-aatccatagtggattcctaatataggcaaaa 7452520  T
Q  211 tcc 213  Q
    |||    
T  7452521 tcc 7452523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 6347189 - 6347114
Alignment:
Q  113 ttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatag 188  Q
    |||| |||||||| ||||||||| |||||| ||| |||| || ||||| || ||||||||||||||||||||||||    
T  6347189 ttgtcaaaattccaacttaaatcctaaaatccaggattttgcaactttatttaccttcaacgactcaaatccatag 6347114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 46664477 - 46664421
Alignment:
Q  118 aaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacg 174  Q
    |||||| | ||||||||||||||||||||||||| |||||||| |||| ||||||||    
T  46664477 aaaatttcaacttaaatcttaaaattcagaattttgcgactttgttcatcttcaacg 46664421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 4157053 - 4157088
Alignment:
Q  207 aaaatccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||||||||||||||||||||||| ||||||    
T  4157053 aaaatccatcgattttgattgcgattttacgatttc 4157088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 240 - 291
Target Start/End: Complemental strand, 6347062 - 6347011
Alignment:
Q  240 ttcatacaaaatcgcatgattttaaagggttttgaagagttttttccatttt 291  Q
    |||| ||||||||||| ||||||||||||||||||||  |||| ||||||||    
T  6347062 ttcacacaaaatcgcaggattttaaagggttttgaaggattttgtccatttt 6347011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 4156906 - 4156955
Alignment:
Q  242 catacaaaatcgcatgattttaaagggttttgaagagttttttccatttt 291  Q
    |||||||||||||| ||||||||||| ||||||||  |||| ||||||||    
T  4156906 catacaaaatcgcaagattttaaaggattttgaaggattttgtccatttt 4156955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 5361892 - 5361855
Alignment:
Q  208 aaatccatcgattttgattgcgattttaagatttcata 245  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  5361892 aaatccatcgactttgattgcgattttacgatttcata 5361855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 36121024 - 36121052
Alignment:
Q  207 aaaatccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||||||    
T  36121024 aaaatccatcgattttgattgcgatttta 36121052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 111 - 291
Target Start/End: Complemental strand, 25539353 - 25539173
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattca-gaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaa 209  Q
    |||||||||||| |||| ||||||| ||||||||| |||||| || | |||||||||||||||||||| |||||||||| ||||||| ||||||||||||    
T  25539353 tgttgttaaaatcccgatttaaatcctaaaattcaagaattt-gcaattttcttcaccttcaacgacttaaatccataggagaatccgaaaataagcaaa 25539255  T
Q  210 atccatcgattttgattgcgattttaagatttcatacaaaatcgcatgattttaaagggttttgaagagttttttccatttt 291  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||| ||||||||||||||||| ||| |||| ||||||||    
T  25539254 atccatcgattttgactgcgatttaacgatttcatacaaaatcgcaggattttaaagggttttgtagaattttgtccatttt 25539173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 148 - 291
Target Start/End: Original strand, 19491896 - 19492033
Alignment:
Q  148 atttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccatcgattttgattgcgattttaagatttcataca 247  Q
    |||| ||||||||||||| ||| |||||||||||||||||| ||||||||||| || | |||||||||||||||||||||||||||||     |||||||    
T  19491896 attttgcgactttcttcatcttaaacgactcaaatccatagcagaatccaaaa-taggtaaaatccatcgattttgattgcgatttta-----tcataca 19491989  T
Q  248 aaatcgcatgattttaaagggttttgaagagttttttccatttt 291  Q
    |||||||| ||||||||||||||||||||| |||| ||||||||    
T  19491990 aaatcgcaggattttaaagggttttgaagaattttatccatttt 19492033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 31238104 - 31237973
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||| ||||||  || |||| || ||||||||||||||||||||||||||| ||||||||||||  |||||| | ||||    
T  31238104 tgttgtcaaaatcccgacttaaatcctaaaatctaggattttgccactttcttcaccttcaacgactcaaattcatagtagaatcttaaaataggaaaaa 31238005  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||||||||||||||||||| ||||||    
T  31238004 tccatcgattttgattgcgattttacgatttc 31237973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 23863448 - 23863324
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||  ||||||  ||||||| |||||||||||||| |||||||||| |||||||||||||||||  |||||| ||||||    
T  23863448 tgttgtcaaaatcccgacttaaattctaaaatcgagaattttgcgactttcttcactttcaacgactgaaatccatagtagaatctcaaaataggcaaaa 23863349  T
Q  211 tccatcgattttgattgcgatttta 235  Q
    ||||||||||||| |||||||||||    
T  23863348 tccatcgattttggttgcgatttta 23863324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 1404785 - 1404916
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||  ||||||| || |||| | ||||||||||||||||||||||| |||||||| ||||||||| ||| || ||||||    
T  1404785 tgttgtcaaaatcccgacttaaattctaaaatttaggattttgtgactttcttcaccttcaacgacttaaatccattgtagaatcctaaactatgcaaaa 1404884  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||||||||||| ||||||| ||||||    
T  1404885 tccatcgattttgattgtgattttacgatttc 1404916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 35566081 - 35565950
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| || |||||||||  ||||||||| |||| |||||||||||||  ||||| ||||||||||||| ||||||||| |||||| ||||||    
T  35566081 tgttgtcaaaatcccaacttaaatcacaaaattcaggattttgcgactttcttcatattcaatgactcaaatccatggtagaatcccaaaataggcaaaa 35565982  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||||||||||||  ||||| ||||||    
T  35565981 tccatcgattttgattgcagttttacgatttc 35565950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 111 - 241
Target Start/End: Original strand, 31578007 - 31578136
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| ||||||||||| |||||||| |  |||| |||| |||||||||||||||||| | |||||| ||||||||||| |||||||||||||    
T  31578007 tgttgtcaaaatcccgacttaaatgttaaaatttaagattttgcgattttcttcaccttcaacgatttaaatcc-tagtagaatcctaaaataagcaaaa 31578105  T
Q  211 tccatcgattttgattgcgattttaagattt 241  Q
    |||||| ||||||||||| |||||| |||||    
T  31578106 tccatcaattttgattgcaattttacgattt 31578136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 118 - 245
Target Start/End: Complemental strand, 15588969 - 15588843
Alignment:
Q  118 aaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccatcg 217  Q
    ||||| ||||||||| ||||||||||||| |||| ||| ||||||||||||||||| |||||||| ||||||||||||  ||||||  ||||||| ||||    
T  15588969 aaaatcccgacttaa-tcttaaaattcaggattttgcgtctttcttcaccttcaacaactcaaatacatagtagaatctcaaaatagacaaaatcaatcg 15588871  T
Q  218 attttgattgcgattttaagatttcata 245  Q
     |||| |||||||||||| |||||||||    
T  15588870 ttttttattgcgattttacgatttcata 15588843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 36429850 - 36429981
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| || ||||||||| || |||  || |||| |||||||||||||||||||||||||||| | ||||| ||||||  |||||| ||||||    
T  36429850 tgttgtcaaaatcccaacttaaatcctataatctaggattttgcgactttcttcaccttcaacgactcaagttcataggagaatctcaaaataggcaaaa 36429949  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    |||||||||||||||||||||| || ||||||    
T  36429950 tccatcgattttgattgcgattgtacgatttc 36429981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 30432464 - 30432552
Alignment:
Q  154 cgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||||| ||||||||||||||||||||||||||||||  ||||||  ||||||||||||||||||||||| |||||| ||||||    
T  30432464 cgactttcttcgccttcaacgactcaaatccatagtagaatctcaaaatagacaaaatccatcgattttgattgcaattttacgatttc 30432552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 111 - 215
Target Start/End: Complemental strand, 1690889 - 1690785
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| |||| ||||||||||||||||||||| || |||| | |||||||||||||||| |||||||| |||||||||| ||||| |||||| ||||||    
T  1690889 tgttgtcaaaactccgacttaaatcttaaaatttaggattttgtgactttcttcaccttcgacgactcagatccatagtaaaatcccaaaataggcaaaa 1690790  T
Q  211 tccat 215  Q
     ||||    
T  1690789 cccat 1690785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 235
Target Start/End: Original strand, 20063716 - 20063840
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||| | |||||| ||   ||| |||  |||||||| |||||| |||| |||||||||||||||||| |||||| ||||||    
T  20063716 tgttgtcaaaatcccgacttaaaacctaaaatccaaggttttgcggttttcttcatcttcaaggacttaaatccatagtagaatcccaaaataggcaaaa 20063815  T
Q  211 tccatcgattttgattgcgatttta 235  Q
    | |||||||||| ||||||||||||    
T  20063816 ttcatcgattttaattgcgatttta 20063840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 16766712 - 16766809
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaa 208  Q
    |||||| ||||||  |||||||||||||||||| || ||||  ||| ||| |||||||||||||| |||||||||||| ||||||| |||||||||||    
T  16766712 tgttgtcaaaattttgacttaaatcttaaaatttaggattttacgattttattcaccttcaacgaatcaaatccatagcagaatcctaaaataagcaa 16766809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 211
Target Start/End: Original strand, 17995057 - 17995157
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    ||||||||||||||||||||||| | |||||| |||||||| |||| ||| |||||| |||||||||||||| | ||| | ||| | |||||| ||||||    
T  17995057 tgttgttaaaattccgacttaaaacctaaaatccagaattttgcgattttattcaccatcaacgactcaaattcgtagcataattccaaaataggcaaaa 17995156  T
Q  211 t 211  Q
    |    
T  17995157 t 17995157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 31023262 - 31023325
Alignment:
Q  148 atttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaat 211  Q
    |||| |||||||| ||||| ||||||||||||||| ||||||||||||| |||||| |||||||    
T  31023262 attttgcgactttattcactttcaacgactcaaattcatagtagaatcctaaaataggcaaaat 31023325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 187
Target Start/End: Complemental strand, 15516686 - 15516610
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccata 187  Q
    ||||||||||||  | ||||||||||||| |||||| |||| |||||||| |||||||||||| | |||||| ||||    
T  15516686 tgttgttaaaatcgcaacttaaatcttaatattcagcattttgcgactttattcaccttcaacaattcaaattcata 15516610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 34841583 - 34841659
Alignment:
Q  136 ttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatc 212  Q
    |||||||| || |||  |||||||| ||||||||||||||||||||||||||| ||||| | |||| | ||||||||    
T  34841583 ttaaaatttaggattctgcgactttattcaccttcaacgactcaaatccataggagaataccaaaacatgcaaaatc 34841659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 212
Target Start/End: Complemental strand, 5395775 - 5395674
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||||  ||| |||||| ||||||  || |||| |||||||| |||| ||| || ||||||||||||||| ||||||  |||||| ||||||    
T  5395775 tgttgtcaaaattttgacctaaatcataaaatataggattttgcgactttattcatcttaaatgactcaaatccatagcagaatctcaaaataggcaaaa 5395676  T
Q  211 tc 212  Q
    ||    
T  5395675 tc 5395674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 27406848 - 27406884
Alignment:
Q  246 caaaatcgcatgattttaaagggttttgaagagtttt 282  Q
    |||||||||||||||||||||||||||||||| ||||    
T  27406848 caaaatcgcatgattttaaagggttttgaagaatttt 27406884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 13502601 - 13502566
Alignment:
Q  207 aaaatccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||||||||||||||||||||||| ||||||    
T  13502601 aaaatccatcgattttgattgcgattttacgatttc 13502566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 212
Target Start/End: Original strand, 8428144 - 8428245
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||||| || || |||||||||||| | ||||| |||| |||  | ||||| || ||||||||| ||||| ||||||  |||||| ||||||    
T  8428144 tgttgtcaaaattcagaattcaatcttaaaatttaaaattttgcgattttacttacctttaatgactcaaattcataggagaatcttaaaataggcaaaa 8428243  T
Q  211 tc 212  Q
    ||    
T  8428244 tc 8428245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 19245155 - 19245232
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatag 188  Q
    |||||| ||||| ||||||||||| ||||||||||| ||||  |||||||  ||| ||| | ||| ||||||||||||    
T  19245155 tgttgtcaaaatcccgacttaaattttaaaattcaggattttacgactttactcatctttagcgattcaaatccatag 19245232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Complemental strand, 15588782 - 15588754
Alignment:
Q  207 aaaatccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||||||    
T  15588782 aaaatccatcgattttgattgcgatttta 15588754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 34841784 - 34841816
Alignment:
Q  209 aatccatcgattttgattgcgattttaagattt 241  Q
    ||||||||||||||||||||||||||| |||||    
T  34841784 aatccatcgattttgattgcgattttacgattt 34841816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 113 - 241
Target Start/End: Complemental strand, 3094378 - 3094250
Alignment:
Q  113 ttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatc 212  Q
    |||| |||||| |||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  3094378 ttgtcaaaatttcgacttaaatcttaaaattcaggattttgctactttcttcaccttcaacgactcaaatccatagtagaatcctaaaataggcaaaatc 3094279  T
Q  213 catcgattttgattgcgattttaagattt 241  Q
    ||||||||||||||||||||||| |||||    
T  3094278 catcgattttgattgcgattttacgattt 3094250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 111 - 235
Target Start/End: Original strand, 15294672 - 15294796
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||| |||||||||| |||| |||||||| |||||||||||||||||||||| |||||||||| | |||||| ||||||    
T  15294672 tgttgtaaaaatcccgacttaaatcctaaaattcaggattttgcgacttttttcaccttcaacgactcaaatcgatagtagaataccaaaataggcaaaa 15294771  T
Q  211 tccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||    
T  15294772 tccatcgattttgattgcgatttta 15294796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 111 - 235
Target Start/End: Original strand, 15475041 - 15475165
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||| |||||||||| |||| |||||||| |||||||||||||||||||||| |||||||||| | |||||| ||||||    
T  15475041 tgttgtaaaaatcccgacttaaatcctaaaattcaggattttgcgacttttttcaccttcaacgactcaaatcgatagtagaataccaaaataggcaaaa 15475140  T
Q  211 tccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||    
T  15475141 tccatcgattttgattgcgatttta 15475165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 111 - 227
Target Start/End: Original strand, 17646995 - 17647111
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| |||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||| |||||| | ||||    
T  17646995 tgttgtcaaaattccgacttaaatcataaaattcaggattttgcgactttcttcaccttcaacgactcaaattcatagtagaatcccaaaataggaaaaa 17647094  T
Q  211 tccatcgattttgattg 227  Q
    | |||||||||||||||    
T  17647095 ttcatcgattttgattg 17647111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 11879602 - 11879733
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||||| |||||||||| |||||||||| |||| || ||||||||||| |||||||||||||||| |||||||||||| |||||| | ||||    
T  11879602 tgttgtcaaaattctgacttaaatcctaaaattcaggattttgcaactttcttcactttcaacgactcaaatctatagtagaatcctaaaataggaaaaa 11879701  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    | ||||||||||||||||||||||| ||||||    
T  11879702 ttcatcgattttgattgcgattttacgatttc 11879733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 11897018 - 11897149
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||||| |||||||||| |||||||||| |||| || ||||||||||| |||||||||||||||| |||||||||||| |||||| | ||||    
T  11897018 tgttgtcaaaattctgacttaaatcctaaaattcaggattttgcaactttcttcactttcaacgactcaaatctatagtagaatcctaaaataggaaaaa 11897117  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    | ||||||||||||||||||||||| ||||||    
T  11897118 ttcatcgattttgattgcgattttacgatttc 11897149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 19704583 - 19704451
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattca-gaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaa 209  Q
    |||||| ||||| || ||||||||||||||||||| |  ||| |||||||||||||||||||||||||||||||||||||||||| | | |||| |||||    
T  19704583 tgttgtcaaaatcccaacttaaatcttaaaattcaaggtttttgcgactttcttcaccttcaacgactcaaatccatagtagaattccataataggcaaa 19704484  T
Q  210 atccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||||||||||||| |||||| ||||||    
T  19704483 atccatcgattttgattgcaattttacgatttc 19704451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 111 - 234
Target Start/End: Original strand, 5922051 - 5922174
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||| |||||| ||| |||| | ||||||||||||||||||||||| | |||||||||||||||| ||||||  |||||    
T  5922051 tgttgtcaaaatcccgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaacgacttatatccatagtagaatcccaaaatagacaaaa 5922150  T
Q  211 tccatcgattttgattgcgatttt 234  Q
    ||||||||||||||||||||||||    
T  5922151 tccatcgattttgattgcgatttt 5922174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 124 - 242
Target Start/End: Complemental strand, 22910316 - 22910198
Alignment:
Q  124 ccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccatcgattttg 223  Q
    |||||||||||| ||||||| || ||||  ||||||||||||| |||||||||||||||| |||||||||||  |||||| ||||||||||| |||||||    
T  22910316 ccgacttaaatcctaaaatttaggattttacgactttcttcacattcaacgactcaaatctatagtagaatcttaaaataggcaaaatccattgattttg 22910217  T
Q  224 attgcgattttaagatttc 242  Q
    |||||||||||||||||||    
T  22910216 attgcgattttaagatttc 22910198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 113 - 242
Target Start/End: Original strand, 31424167 - 31424296
Alignment:
Q  113 ttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatc 212  Q
    |||| ||||| | |||||||||  |||||||||| ||||  ||||||||||| | ||||||||||||||||||||| ||||||| |||||| ||||||||    
T  31424167 ttgtcaaaatcctgacttaaattctaaaattcaggattttacgactttcttccctttcaacgactcaaatccatagaagaatcccaaaataggcaaaatc 31424266  T
Q  213 catcgattttgattgcgattttaagatttc 242  Q
    ||| ||||||||||||||||||| ||||||    
T  31424267 cattgattttgattgcgattttacgatttc 31424296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 111 - 240
Target Start/End: Original strand, 45403031 - 45403160
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| |||||  ||||||||||  |||||| ||  |||| ||||||||||| ||||||||||||| |||||||||| ||||||  |||||||||||||    
T  45403031 tgttgtcaaaatcgcgacttaaattctaaaatccaagattttgcgactttcttgaccttcaacgacttaaatccatagaagaatctcaaaataagcaaaa 45403130  T
Q  211 tccatcgattttgattgcgattttaagatt 240  Q
    ||||||||||||||||||||||||| ||||    
T  45403131 tccatcgattttgattgcgattttacgatt 45403160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 148 - 242
Target Start/End: Complemental strand, 29384406 - 29384313
Alignment:
Q  148 atttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccatcgattttgattgcgattttaagatttc 242  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||| |||||||||||||||| ||||||    
T  29384406 attttgcgactttcttcaccttcaacgactcaaatccatagtataatccaaaaataggcaaaattcatcga-tttgattgcgattttacgatttc 29384313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 148 - 245
Target Start/End: Original strand, 6810861 - 6810957
Alignment:
Q  148 atttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccatcgattttgattgcgattttaagatttcata 245  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||   |||||| ||||||| |||||||||||||| |||||||| |||||||||    
T  6810861 attttgcgactttcttcaccttcaacgactcaaatccatagtagaattttaaaataggcaaaat-catcgattttgattacgattttacgatttcata 6810957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 158 - 242
Target Start/End: Original strand, 23142224 - 23142308
Alignment:
Q  158 tttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccatcgattttgattgcgattttaagatttc 242  Q
    |||||||| ||||||||||| |||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||| ||||||    
T  23142224 tttcttcaacttcaacgactgaaatccatagtagaatcctaaaataggcaaaattcatcgattttgattgcgattttacgatttc 23142308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 6292467 - 6292351
Alignment:
Q  113 ttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatc 212  Q
    |||||||||| |||||||||||||||||||| |  |||| | |||||| |||| ||| ||||||||||| |||||||| ||| | |||||||| |||||     
T  6292467 ttgttaaaataccgacttaaatcttaaaatttaagattttgtgacttttttcatctttaacgactcaaacccatagtataattctaaaataagaaaaatt 6292368  T
Q  213 catcgattttgattgcg 229  Q
    || ||||||||||||||    
T  6292367 caacgattttgattgcg 6292351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 27836591 - 27836467
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| |||||||  ||||| ||| |||||||||| |||| |||  ||| |||||||||||| ||| |||||||||||||||| | |||||||||||||    
T  27836591 tgttgtcaaaattcaaacttagatcctaaaattcaggattttgcggttttattcaccttcaacaactgaaatccatagtagaattctaaaataagcaaaa 27836492  T
Q  211 tccatcgattttgattgcgatttta 235  Q
    | |||| ||||||||| | ||||||    
T  27836491 ttcatcaattttgattacaatttta 27836467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 9212295 - 9212251
Alignment:
Q  198 aaaataagcaaaatccatcgattttgattgcgattttaagatttc 242  Q
    |||||| | ||||||||||||||||||||||||||||||||||||    
T  9212295 aaaataggaaaaatccatcgattttgattgcgattttaagatttc 9212251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 242
Target Start/End: Complemental strand, 7489393 - 7489279
Alignment:
Q  129 ttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatcc----aaaaataagcaaaatccatcgattttga 224  Q
    ||||||| |||||| |||||||| ||   |||||||||||||||||||| |||||| ||||||||| |     ||||||  ||||||  |||||||||||    
T  7489393 ttaaatcgtaaaatacagaattttgc---tttcttcaccttcaacgactaaaatccgtagtagaattctaaataaaatagacaaaatttatcgattttga 7489297  T
Q  225 ttgcgattttaagatttc 242  Q
    |||| |||||| ||||||    
T  7489296 ttgcaattttatgatttc 7489279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 24056680 - 24056618
Alignment:
Q  126 gacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatag 188  Q
    |||||||||| |||||| ||| |||| |||||||| ||||| || ||||||||||||||||||    
T  24056680 gacttaaatcctaaaatccaggattttgcgactttattcacatttaacgactcaaatccatag 24056618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 32424394 - 32424464
Alignment:
Q  171 aacgactcaaatccatagtagaatccaaaaataagcaaaatccatcgattttgattgcgattttaagattt 241  Q
    ||||| |||||| ||||||||||||| ||||||  ||||||  || ||||||||||||||||||| |||||    
T  32424394 aacgattcaaattcatagtagaatcctaaaatagacaaaatttatagattttgattgcgattttacgattt 32424464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 477174 - 477101
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatcc 184  Q
    |||||| ||||| | |||||||||| |||||| ||| |||| | |||||||||||||||||| |||| ||||||    
T  477174 tgttgtcaaaatcctgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaatgacttaaatcc 477101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 15231774 - 15231850
Alignment:
Q  159 ttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccatcgattttgattgcgatttta 235  Q
    ||||||||||||||||||| |||| |||| || ||||  |||||| |||||||||| |   ||||||||||||||||    
T  15231774 ttcttcaccttcaacgactgaaattcatactaaaatcttaaaataggcaaaatccaacatatttgattgcgatttta 15231850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 15761566 - 15761466
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| |||||  ||||||||||| |||| | ||| |||| | || ||| || |||||||||||||||||| ||||| | ||||| |||||| ||||||    
T  15761566 tgttgtcaaaatctcgacttaaatcctaaactccaggattttgtgagtttatttaccttcaacgactcaaattcatagcaaaatcccaaaataggcaaaa 15761467  T
Q  211 t 211  Q
    |    
T  15761466 t 15761466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 19704385 - 19704349
Alignment:
Q  207 aaaatccatcgattttgattgcgattttaagatttca 243  Q
    ||||||||||||||||||||| |||||||||||||||    
T  19704385 aaaatccatcgattttgattgtgattttaagatttca 19704349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 29384240 - 29384205
Alignment:
Q  207 aaaatccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||||||||||||||||||||||| ||||||    
T  29384240 aaaatccatcgattttgattgcgattttacgatttc 29384205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Complemental strand, 15761286 - 15761258
Alignment:
Q  207 aaaatccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||||||    
T  15761286 aaaatccatcgattttgattgcgatttta 15761258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 17647198 - 17647226
Alignment:
Q  207 aaaatccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||||||    
T  17647198 aaaatccatcgattttgattgcgatttta 17647226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 129 - 291
Target Start/End: Complemental strand, 17056108 - 17055946
Alignment:
Q  129 ttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccatcgattttgattgc 228  Q
    ||||||| |||||| ||| |||| || | ||||| |||||||||||||||| ||||||||||||||   |||||||| ||||||||||||||||||||||    
T  17056108 ttaaatcctaaaatccaggattttgcaattttctccaccttcaacgactcagatccatagtagaattttaaaataagtaaaatccatcgattttgattgc 17056009  T
Q  229 gattttaagatttcatacaaaatcgcatgattttaaagggttttgaagagttttttccatttt 291  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| || |||||    
T  17056008 gattttacgatttcatacaaaatcgcaagattttaaagggttttgaagaattttgtcgatttt 17055946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 23528658 - 23528789
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| || |||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||    
T  23528658 tgttgtcaaaatcccaacttaaatcttaaaattcaggattttgcgactttcttcatcttcaacgactcaaatccatagtagaatcctaaaataggcaaaa 23528757  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    || ||||||||||| |||||||||| ||||||    
T  23528758 tctatcgattttgaatgcgattttacgatttc 23528789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 9955162 - 9955031
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| || ||||||||| ||||||| || |||| ||||||||||||||||||||||||| |||||||  ||||||||| |||||||||||||    
T  9955162 tgttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcaacgacttaaatccaatgtagaatcccaaaataagcaaaa 9955063  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||||||||||||||||||| ||||||    
T  9955062 tccatcgattttgattgcgattttacgatttc 9955031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 19010073 - 19009942
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| | |||||||||| |||||||||| |||| |||||||| ||||||||||| |||| |||||||||||| ||| | |||||||||||||    
T  19010073 tgttgtcaaaatccggacttaaatcctaaaattcaggattttgcgacttttttcaccttcaatgacttaaatccatagtaaaattctaaaataagcaaaa 19009974  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||||||||||||||||||| ||||||    
T  19009973 tccatcgattttgattgcgattttacgatttc 19009942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 41032797 - 41032673
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| |||||  ||||||||||| || ||||||| |||| |||| ||||||||||||||||||||||||||||||||||||| | |||||| ||||||    
T  41032797 tgttgtcaaaatctcgacttaaatcgtagaattcaggattttgcgattttcttcaccttcaacgactcaaatccatagtagaattctaaaataggcaaaa 41032698  T
Q  211 tccatcgattttgattgcgatttta 235  Q
    |||||||||||| ||||||||||||    
T  41032697 tccatcgattttaattgcgatttta 41032673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 9327342 - 9327211
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||||||||| | |||||||||| ||||||| ||  ||| |||||||||| |||||||||||||||||||| |||||| ||||| ||||||  |||||    
T  9327342 tgttgttaaaatcctgacttaaatcctaaaatttagggttttgcgactttctacaccttcaacgactcaaatctatagtaaaatcccaaaatagacaaaa 9327243  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||||||||||||||||||| ||||||    
T  9327242 tccatcgattttgattgcgattttacgatttc 9327211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 12513283 - 12513414
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||| || |||  || |||| ||||||||||||| |||||||||||||||||||||||| ||||  ||||||| |||||    
T  12513283 tgttgtcaaaatcccgacttaaatcctacaatctaggattttgcgactttcttcagcttcaacgactcaaatccatagtaaaatcataaaataatcaaaa 12513382  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||||||||||||||||||| ||||||    
T  12513383 tccatcgattttgattgcgattttacgatttc 12513414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 21846395 - 21846271
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||| ||||||| |||||| ||| |||| |||||||| ||||||||||||||||||||||||||||||||||  ||||||   ||||    
T  21846395 tgttgtcaaaatcccgagttaaatcctaaaatccaggattttgcgacttttttcaccttcaacgactcaaatccatagtagaatctcaaaatagaaaaaa 21846296  T
Q  211 tccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||    
T  21846295 tccatcgattttgattgcgatttta 21846271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 13276393 - 13276262
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||| ||||||| ||||||  || |||| ||||||||||||| ||||||||||  |||||||||||||||||| |||||| ||||||    
T  13276393 tgttgtcaaaatcccgatttaaatcctaaaatctaggattttgcgactttcttcatcttcaacgacctaaatccatagtagaatcctaaaataggcaaaa 13276294  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    || |||||||||||||||||||||| ||||||    
T  13276293 tcaatcgattttgattgcgattttacgatttc 13276262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 111 - 233
Target Start/End: Complemental strand, 25146895 - 25146773
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| | |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||  ||||     
T  25146895 tgttgtcaaaatcctgacttaaatcctaaaattcagaattttgcgactttcttcaccttcaacgactcaaattcatagtagaatcccaaaatagacaaag 25146796  T
Q  211 tccatcgattttgattgcgattt 233  Q
    | |||| ||||| ||||||||||    
T  25146795 tacatcaattttaattgcgattt 25146773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 9352190 - 9352059
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||| |||||| |||  ||| |||||||||||||||||||| |||||||||| |||| ||| ||| ||||||  |||||    
T  9352190 tgttgtcaaaatcccgacttaaatcctaaaatccagggttttgcgactttcttcaccttcaaagactcaaatctatagcagagtcccaaaatagacaaaa 9352091  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    ||| ||||||||||||||||||||| ||||||    
T  9352090 tccgtcgattttgattgcgattttatgatttc 9352059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 113 - 235
Target Start/End: Original strand, 13100195 - 13100317
Alignment:
Q  113 ttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatc 212  Q
    |||| ||||| || ||||||||  ||||||  || ||||  ||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||| |    
T  13100195 ttgtcaaaatcccaacttaaattctaaaatcgaggattttacgactttcttcacgttcaacgactcaaatccatagtagaatcctaaaataggcaaaaac 13100294  T
Q  213 catcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||    
T  13100295 catcgattttgattgcgatttta 13100317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 111 - 233
Target Start/End: Complemental strand, 18304938 - 18304815
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaa-cgactcaaatccatagtagaatccaaaaataagcaaa 209  Q
    |||||| ||||| || ||||||||| |||||| ||| |||| |||||||||||||||||||| |||||||||| ||||||||||||  ||||||  ||||    
T  18304938 tgttgtcaaaatcccaacttaaatcctaaaatccagtattttgcgactttcttcaccttcaaacgactcaaattcatagtagaatctcaaaatagacaaa 18304839  T
Q  210 atccatcgattttgattgcgattt 233  Q
    ||||||| ||||||||||||||||    
T  18304838 atccatcaattttgattgcgattt 18304815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 42180192 - 42180061
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| || ||||||||  |||||||||| |||| |||||||||||| |||||||||| ||||||||||||||||||   |||||| ||||||    
T  42180192 tgttgtcaaaatcccaacttaaattctaaaattcaggattttgcgactttcttccccttcaacgagtcaaatccatagtagaatttcaaaataggcaaaa 42180093  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    | ||||||||||||||| |||| || ||||||    
T  42180092 tacatcgattttgattgtgattctacgatttc 42180061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 16125570 - 16125452
Alignment:
Q  126 gacttaaatcttaaaattcagaatttcgcgactttctt---caccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccatcgatttt 222  Q
    |||||||||| |||||||||| |||| |||||||||||   |||||||||||||  |||||||||||| ||||  |||||| ||||||||||| ||||||    
T  16125570 gacttaaatcctaaaattcaggattttgcgactttctttttcaccttcaacgacctaaatccatagtaaaatcttaaaataggcaaaatccattgatttt 16125471  T
Q  223 gattgcgattttaagattt 241  Q
    ||||||||||||| |||||    
T  16125470 gattgcgattttacgattt 16125452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 9128967 - 9128836
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    ||||||||||||  ||||||||||| ||||| | || || | |||||||||||||| || ||||||||||||  |||||||||||  ||||||  |||||    
T  9128967 tgttgttaaaatcacgacttaaatcctaaaaattaggatcttgcgactttcttcacatttaacgactcaaatttatagtagaatcttaaaatagacaaaa 9128868  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    | ||||||||||||||||||||| | ||||||    
T  9128867 ttcatcgattttgattgcgatttgacgatttc 9128836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 17869872 - 17869746
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| | |||||||||||||||     | |||| |||||||||||||||||| |||||  ||||||| |||||||||| |||||| ||||||    
T  17869872 tgttgtcaaaatcctgacttaaatcttaaa-----ggattttgcgactttcttcaccttcgacgacctaaatccacagtagaatcctaaaataggcaaaa 17869778  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    | | |||||||||||||| |||||| ||||||    
T  17869777 ttcttcgattttgattgcaattttacgatttc 17869746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 111 - 184
Target Start/End: Original strand, 30619077 - 30619150
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatcc 184  Q
    |||||| ||||| |||||||||||| |||||| ||| |||| |||| |||||||||||||||||||||||||||    
T  30619077 tgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgattttcttcaccttcaacgactcaaatcc 30619150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 18337648 - 18337547
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||| | || ||||| ||| |||| || ||||| ||||||||||||||||||||||||||| |||| || |||||| ||||||    
T  18337648 tgttgtcaaaatcccgacttatacct-aaaatccaggattttgcaactttattcaccttcaacgactcaaatccatagcagaaccccaaaataggcaaaa 18337550  T
Q  211 tcc 213  Q
    |||    
T  18337549 tcc 18337547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 111 - 196
Target Start/End: Complemental strand, 12800708 - 12800623
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatcc 196  Q
    |||||| ||||| || ||||||||| ||||||| || ||||  ||||||||||||| |||||||||||||||| |||||| |||||    
T  12800708 tgttgtgaaaatcccaacttaaatcctaaaatttaggattttacgactttcttcacattcaacgactcaaatctatagtaaaatcc 12800623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 195
Target Start/End: Complemental strand, 14074497 - 14074413
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatc 195  Q
    |||||| ||||| ||| |||||||| ||||||  || |||| |||||||||||||  |||||||||||||||||| |||||||||    
T  14074497 tgttgtcaaaatcccgtcttaaatcctaaaatgtaggattttgcgactttcttcatgttcaacgactcaaatccagagtagaatc 14074413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 34478897 - 34478833
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacga 175  Q
    |||||||||||| ||||||||||||||||||||  | |||| | |||||||||||||||||||||    
T  34478897 tgttgttaaaatcccgacttaaatcttaaaatttgggattttgtgactttcttcaccttcaacga 34478833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 13100391 - 13100426
Alignment:
Q  207 aaaatccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||||||||||||||||||||||||||||||    
T  13100391 aaaatccatcgattttgattgcgattttaagatttc 13100426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 18228278 - 18228333
Alignment:
Q  186 tagtagaatccaaaaataagcaaaatccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||||| |||||| |||||||||||| |||||||||| ||||||| ||||||    
T  18228278 tagtagaatcccaaaataggcaaaatccatcaattttgattg-gattttatgatttc 18228333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 32881416 - 32881460
Alignment:
Q  198 aaaataagcaaaatccatcgattttgattgcgattttaagatttc 242  Q
    |||||| ||||||| ||||||||||||||||||||||| ||||||    
T  32881416 aaaataggcaaaattcatcgattttgattgcgattttacgatttc 32881460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 213
Target Start/End: Original strand, 8772719 - 8772809
Alignment:
Q  124 ccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataag-caaaatcc 213  Q
    ||||||||||||  ||||| |||||||| |||||||| |  | ||||||| |||||||||||||| ||| ||| |||| ||| ||||||||    
T  8772719 ccgacttaaatcccaaaatccagaattttgcgactttgtgtagcttcaacaactcaaatccatagcagagtcccaaaaaaagacaaaatcc 8772809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Complemental strand, 18304739 - 18304711
Alignment:
Q  207 aaaatccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||||||    
T  18304739 aaaatccatcgattttgattgcgatttta 18304711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 23528857 - 23528885
Alignment:
Q  207 aaaatccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||||||    
T  23528857 aaaatccatcgattttgattgcgatttta 23528885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 111 - 291
Target Start/End: Complemental strand, 24649816 - 24649635
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataa-gcaaa 209  Q
    |||||| ||||| |||||||||||| ||||||  || ||||   ||||| |||||||||||||||||||||||||||||||||| | ||||||| |||||    
T  24649816 tgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaattccaaaataaagcaaa 24649717  T
Q  210 atccatcgattttgattgcgattttaagatttcatacaaaatcgcatgattttaaagggttttgaagagttttttccatttt 291  Q
    || |||| ||||||| || ||||||| |||||||||||| |||||| ||||||||||||||||||||| |||| ||||||||    
T  24649716 attcatcaattttgactgtgattttacgatttcatacaatatcgcaggattttaaagggttttgaagaattttatccatttt 24649635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 29067286 - 29067417
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||  |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||    
T  29067286 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaatagacaaaa 29067385  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||||||||||| ||||||| ||||||    
T  29067386 tccatcgattttgattgtgattttacgatttc 29067417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 20756041 - 20756172
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||  |||||||||| |||| |||| ||||||||||||||| ||||||||||||||||||||||  |||||| ||||||    
T  20756041 tgttgtcaaaatcccgacttaaattataaaattcaggattttgcgattttcttcaccttcaatgactcaaatccatagtagaatcttaaaataggcaaaa 20756140  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    || ||||||||||||||| |||||| ||||||    
T  20756141 tcaatcgattttgattgcaattttacgatttc 20756172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 28745772 - 28745903
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||| ||||||| ||||||| || |||| |||||||||||||||||||||||||||||| ||||||||||||  ||||||  |||||    
T  28745772 tgttgtcaaaatcccgatttaaatcctaaaatttaggattttgcgactttcttcaccttcaacgactcaaattcatagtagaatctcaaaatagacaaaa 28745871  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    | ||||||||||||||||||||||| ||||||    
T  28745872 ttcatcgattttgattgcgattttacgatttc 28745903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 116 - 234
Target Start/End: Original strand, 21963436 - 21963554
Alignment:
Q  116 ttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccat 215  Q
    ||||||| |||||||||||| |||||||||  ||||  |||||||||||||||| |||||||||||||||||||| ||||| |||||| |||||||||||    
T  21963436 ttaaaatcccgacttaaatcctaaaattcaagattttacgactttcttcaccttgaacgactcaaatccatagtaaaatcctaaaatatgcaaaatccat 21963535  T
Q  216 cgattttgattgcgatttt 234  Q
    |||||||||| ||||||||    
T  21963536 cgattttgatagcgatttt 21963554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 116 - 234
Target Start/End: Original strand, 21985872 - 21985990
Alignment:
Q  116 ttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccat 215  Q
    ||||||| |||||||||||| |||||||||  ||||  |||||||||||||||| |||||||||||||||||||| ||||| |||||| |||||||||||    
T  21985872 ttaaaatcccgacttaaatcctaaaattcaagattttacgactttcttcaccttgaacgactcaaatccatagtaaaatcctaaaatatgcaaaatccat 21985971  T
Q  216 cgattttgattgcgatttt 234  Q
    |||||||||| ||||||||    
T  21985972 cgattttgatagcgatttt 21985990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 126 - 235
Target Start/End: Complemental strand, 30727803 - 30727694
Alignment:
Q  126 gacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccatcgattttgat 225  Q
    ||||||||||||||||| | ||||||  |||||||||||||||||||||||||||||| |||||||||||| ||||||  |||||| |||||||||||||    
T  30727803 gacttaaatcttaaaatcctgaattttacgactttcttcaccttcaacgactcaaatctatagtagaatcccaaaatagacaaaattcatcgattttgat 30727704  T
Q  226 tgcgatttta 235  Q
    ||||||||||    
T  30727703 tgcgatttta 30727694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 3449418 - 3449288
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||| |||||||||| |||| ||||||||||| |||||||||| || ||||| |||||||||||| |||||| ||||||    
T  3449418 tgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttctttaccttcaacg-ctaaaatctatagtagaatcctaaaataggcaaaa 3449320  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    ||||| |||||| |||||||||||| ||||||    
T  3449319 tccatagatttttattgcgattttacgatttc 3449288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 8156258 - 8156126
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataag-caaa 209  Q
    |||||| ||||| || ||||||||  |||||||||||||||  ||| ||| ||||||||||| ||||||||||||||||| ||||| ||||| || ||||    
T  8156258 tgttgtcaaaatcccaacttaaattctaaaattcagaattttacgatttttttcaccttcaatgactcaaatccatagtataatcccaaaattagacaaa 8156159  T
Q  210 atccatcgattttgattgcgattttaagatttc 242  Q
    |||||||||||||||||||||||||| ||||||    
T  8156158 atccatcgattttgattgcgattttacgatttc 8156126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 112 - 242
Target Start/End: Original strand, 39427905 - 39428035
Alignment:
Q  112 gttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaat 211  Q
    ||||| ||||| |||| |||||| ||||||| | | |||| || ||||||||||| |||||||||||||||| |||||||||||| ||||||  |||| |    
T  39427905 gttgtcaaaatcccgatttaaattttaaaatcctggattttgcaactttcttcacgttcaacgactcaaatcgatagtagaatcccaaaatagacaaagt 39428004  T
Q  212 ccatcgattttgattgcgattttaagatttc 242  Q
    |||||||||||||||||||||||| ||||||    
T  39428005 ccatcgattttgattgcgattttacgatttc 39428035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 118 - 242
Target Start/End: Original strand, 17064330 - 17064454
Alignment:
Q  118 aaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccatcg 217  Q
    ||||| ||||||||||||||||||||||| |||| |||| | | ||||||||||||||||| ||| ||||||||||| | ||||||  |||||| |||||    
T  17064330 aaaatcccgacttaaatcttaaaattcaggattttgcgattgtgttcaccttcaacgactccaattcatagtagaattctaaaatagacaaaattcatcg 17064429  T
Q  218 attttgattgcgattttaagatttc 242  Q
    ||||| |||||||||||| ||||||    
T  17064430 atttttattgcgattttacgatttc 17064454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 111 - 234
Target Start/End: Original strand, 22137280 - 22137403
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||| ||||||| | |||||||||| |||||||||  || |  |||||||||||||||| |||| ||||||||||||||| ||||| |||||| ||||||    
T  22137280 tgtttttaaaatcctgacttaaatcctaaaattcaagatgttacgactttcttcaccttgaacgcctcaaatccatagtaaaatcccaaaatatgcaaaa 22137379  T
Q  211 tccatcgattttgattgcgatttt 234  Q
    |||||||||||| |||||||||||    
T  22137380 tccatcgattttaattgcgatttt 22137403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 24620330 - 24620196
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcg---cgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagca 207  Q
    |||||| |||||||||||||||||| ||||||| |  |||| |   ||||||||||||||||||||||||||||| || |||||||||  |||||| |||    
T  24620330 tgttgtcaaaattccgacttaaatcctaaaatttaagattttgcgacgactttcttcaccttcaacgactcaaattcacagtagaatctcaaaataggca 24620231  T
Q  208 aaatccatcgattttgattgcgattttaagatttc 242  Q
    |||| |||||||||| ||||| |||||| ||||||    
T  24620230 aaattcatcgattttaattgcaattttacgatttc 24620196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 148 - 235
Target Start/End: Complemental strand, 22494871 - 22494784
Alignment:
Q  148 atttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccatcgattttgattgcgatttta 235  Q
    |||| |||||||| |||||||||||||||| |||| ||||||||||||| ||||||| |||||| |||||||||||||||||||||||    
T  22494871 attttgcgacttttttcaccttcaacgactaaaattcatagtagaatcctaaaataaacaaaattcatcgattttgattgcgatttta 22494784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 123 - 213
Target Start/End: Complemental strand, 15806621 - 15806531
Alignment:
Q  123 tccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatcc 213  Q
    ||||||||||||| || ||| |||||||| |||||||| ||||||||||| ||||||||||||||| ||||||| |||| | |||||||||    
T  15806621 tccgacttaaatcctacaatccagaattttgcgactttattcaccttcaatgactcaaatccatagcagaatcccaaaacaggcaaaatcc 15806531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 242
Target Start/End: Complemental strand, 22356173 - 22356048
Alignment:
Q  118 aaaattccgacttaaatcttaaaattcagaatttcgcgactttctt-caccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccatc 216  Q
    |||||||||||||||||| |||||||||| ||||   || ||| || || ||||||| | |  ||| ||||||||||||| ||||||||||||||||||     
T  22356173 aaaattccgacttaaatcctaaaattcaggattttaagattttttttcagcttcaacaatttgaattcatagtagaatcctaaaataagcaaaatccatg 22356074  T
Q  217 gattttgattgcgattttaagatttc 242  Q
     |||||||||||||||||| ||||||    
T  22356073 aattttgattgcgattttacgatttc 22356048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 111 - 213
Target Start/End: Original strand, 27676358 - 27676460
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| | |||||||||| |||||| ||| |||| |||||||| ||||||||| | ||||||||||||||| ||||||| |||||| | ||||    
T  27676358 tgttgtcaaaatcctgacttaaatcgtaaaatgcaggattttgcgactttattcaccttctatgactcaaatccatagcagaatcccaaaataggtaaaa 27676457  T
Q  211 tcc 213  Q
    |||    
T  27676458 tcc 27676460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 28135724 - 28135801
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatag 188  Q
    |||||| |||||||||| ||||||| |||||||||| |||| |||||||| ||||| ||||  |||||||||||||||    
T  28135724 tgttgtcaaaattccgatttaaatcgtaaaattcaggattttgcgactttattcactttcagtgactcaaatccatag 28135801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 203
Target Start/End: Original strand, 17796379 - 17796471
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaata 203  Q
    |||||| |||||||||||||||||| ||||||  || ||||  ||||||| |||| ||||||| |||||||| ||||| ||||||| ||||||    
T  17796379 tgttgtcaaaattccgacttaaatcataaaatctaggattttacgactttattcatcttcaacaactcaaattcatagcagaatcctaaaata 17796471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 203
Target Start/End: Original strand, 19104819 - 19104911
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaata 203  Q
    |||||| |||||||||||||||||| ||||||  || ||||  ||||||| |||| ||||||| |||||||| ||||| ||||||| ||||||    
T  19104819 tgttgtcaaaattccgacttaaatcataaaatctaggattttacgactttattcatcttcaacaactcaaattcatagcagaatcctaaaata 19104911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 42696920 - 42696980
Alignment:
Q  182 tccatagtagaatccaaaaataagcaaaatccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||||||||  |||||| ||||||| ||||||||||||||||||||||| ||||||    
T  42696920 tccatagtagaatctcaaaataggcaaaattcatcgattttgattgcgattttacgatttc 42696980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 10873022 - 10872971
Alignment:
Q  162 ttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatcc 213  Q
    ||||||||||||||||||||||||||| ||||||  |||||| |||||||||    
T  10873022 ttcaccttcaacgactcaaatccatagcagaatctcaaaataggcaaaatcc 10872971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 25870503 - 25870363
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacga----ctcaaatccatagtagaatccaaaaataagc 206  Q
    |||||| |||||  ||||||||||| |||||| ||  |||| | ||||||||||| |||||||||    ||||||| | |||||||| |  |||||| ||    
T  25870503 tgttgtcaaaatctcgacttaaatcctaaaatccaagattttgtgactttcttcatcttcaacgaacgactcaaattcgtagtagaacctcaaaataggc 25870404  T
Q  207 aaaatccatcg-----attttgattgcgattttaagatttc 242  Q
    |||||||||||     |||||||||||||||||| ||||||    
T  25870403 aaaatccatcgatttgattttgattgcgattttacgatttc 25870363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 213
Target Start/End: Original strand, 13005929 - 13006031
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| |||||  |||||||||| | |||||||| ||||| |||||||| |||||||| |||   |||||||||||| | ||||| |||| | ||||||    
T  13005929 tgttgtcaaaatctcgacttaaatttcaaaattcataattttgcgactttattcacctttaacatttcaaatccatagcaaaatcccaaaacatgcaaaa 13006028  T
Q  211 tcc 213  Q
    |||    
T  13006029 tcc 13006031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 203
Target Start/End: Original strand, 17796272 - 17796362
Alignment:
Q  113 ttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaata 203  Q
    |||| |||||||| ||||||||| ||||||  || |||| | |||||| |||||||||||| ||| |||| ||||| ||||||| ||||||    
T  17796272 ttgtcaaaattccaacttaaatcataaaatctaggattttgtgactttattcaccttcaacaactaaaattcatagcagaatcctaaaata 17796362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 203
Target Start/End: Original strand, 19104712 - 19104802
Alignment:
Q  113 ttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaata 203  Q
    |||| |||||||| ||||||||| ||||||  || |||| | |||||| |||||||||||| ||| |||| ||||| ||||||| ||||||    
T  19104712 ttgtcaaaattccaacttaaatcataaaatctaggattttgtgactttattcaccttcaacaactaaaattcatagcagaatcctaaaata 19104802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 203
Target Start/End: Original strand, 17796488 - 17796580
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaata 203  Q
    |||||| |||||| ||| ||||||| ||||||  || ||||  ||||||| |||||||||||| ||| |||| ||||| ||||||| ||||||    
T  17796488 tgttgtcaaaatttcgaattaaatcataaaatctaggatttttcgactttattcaccttcaacaacttaaattcatagcagaatcctaaaata 17796580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 203
Target Start/End: Original strand, 19104928 - 19105020
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaata 203  Q
    |||||| |||||| ||| ||||||| ||||||  || ||||  ||||||| |||||||||||| ||| |||| ||||| ||||||| ||||||    
T  19104928 tgttgtcaaaatttcgaattaaatcataaaatctaggatttttcgactttattcaccttcaacaacttaaattcatagcagaatcctaaaata 19105020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 6861065 - 6861033
Alignment:
Q  209 aatccatcgattttgattgcgattttaagattt 241  Q
    ||||||||||||||||||||||||||| |||||    
T  6861065 aatccatcgattttgattgcgattttatgattt 6861033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 20756223 - 20756251
Alignment:
Q  207 aaaatccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||||||    
T  20756223 aaaatccatcgattttgattgcgatttta 20756251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Complemental strand, 25870250 - 25870222
Alignment:
Q  207 aaaatccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||||||    
T  25870250 aaaatccatcgattttgattgcgatttta 25870222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 28745977 - 28746005
Alignment:
Q  207 aaaatccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||||||    
T  28745977 aaaatccatcgattttgattgcgatttta 28746005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 29067478 - 29067506
Alignment:
Q  207 aaaatccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||||||    
T  29067478 aaaatccatcgattttgattgcgatttta 29067506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 39428104 - 39428132
Alignment:
Q  207 aaaatccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||||||    
T  39428104 aaaatccatcgattttgattgcgatttta 39428132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 26281436 - 26281306
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| |||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||    
T  26281436 tgttgtcaaaattccgacttaaatcataaaattcaggattttgcgactttcttcaccttcaacgactcaaatccattgtagaattccaaaataagcaaaa 26281337  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||||||| ||||||||| | ||||||    
T  26281336 tccatcgattttg-ttgcgatttaacgatttc 26281306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 111 - 249
Target Start/End: Complemental strand, 22687791 - 22687653
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||| |||||||||| | || ||||||||||||| ||||||| |||||||||||| | ||||||| |||||| ||||||    
T  22687791 tgttgtcaaaatcccgacttaaatcctaaaattcaggaatttgcgactttcttcaacttcaacaactcaaatccatcgcagaatcccaaaataggcaaaa 22687692  T
Q  211 tccatcgattttgattgcgattttaagatttcatacaaa 249  Q
    ||||||||||||||||||||||||| |||||| ||||||    
T  22687691 tccatcgattttgattgcgattttacgatttcttacaaa 22687653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 5058531 - 5058662
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||| ||||||||||||||| |||| |||||||||||||||||||  |||||||||||||||||  |||||| ||||||    
T  5058531 tgttgtcaaaatcccgacttaaatcctaaaattcagaattttgcgattttcttcaccttcaacgacctaaatccatagtagaatcttaaaataggcaaaa 5058630  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    |||  |||||||||||||||||||| ||||||    
T  5058631 tcctacgattttgattgcgattttacgatttc 5058662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 8346660 - 8346529
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| | ||| ||||| |||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||    
T  8346660 tgttgtcaaaatcctgacctaaatattaaaatttaggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaataggaaaaa 8346561  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    |||||||||||| |||||||||||| ||||||    
T  8346560 tccatcgattttaattgcgattttacgatttc 8346529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 24990198 - 24990067
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||||||||||||||||  |||||| || |||| | ||||||||| |||| ||||||||||||||||||||||||||| |||||| ||||||    
T  24990198 tgttgtcaaaattccgacttaaatccaaaaatttaggattttgtgactttctttacctccaacgactcaaatccatagtagaatcctaaaataggcaaaa 24990099  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    |||||||||||||||||| |||||| ||||||    
T  24990098 tccatcgattttgattgcaattttacgatttc 24990067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 27221420 - 27221551
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||||||||| || ||||||||  |||||||||| |||| ||||||||||||| |||||||||||||||| ||||||||||||  |||||  ||||||    
T  27221420 tgttgttaaaatcccaacttaaattctaaaattcaggattttgcgactttcttcatcttcaacgactcaaatacatagtagaatcttaaaattggcaaaa 27221519  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||||||||||||||||||| ||||||    
T  27221520 tccatcgattttgattgcgattttacgatttc 27221551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 111 - 235
Target Start/End: Original strand, 11326388 - 11326512
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| || ||||||||| ||||||| || |||| ||||||||||||||||||| ||||| |||||||||||||||||  |||||| ||||||    
T  11326388 tgttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcagcgactaaaatccatagtagaatcttaaaataggcaaaa 11326487  T
Q  211 tccatcgattttgattgcgatttta 235  Q
    || ||||||||||||||||||||||    
T  11326488 tctatcgattttgattgcgatttta 11326512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 118 - 233
Target Start/End: Original strand, 8571252 - 8571367
Alignment:
Q  118 aaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccatcg 217  Q
    ||||| |||||||||||| |||||| ||| |||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||   |||| ||||||    
T  8571252 aaaatcccgacttaaatcataaaatccaggattttgcgactttcttcacctttaacgactcaaatccatagtagaatcctaaaatagagaaaaaccatcg 8571351  T
Q  218 attttgattgcgattt 233  Q
    ||||||||||||||||    
T  8571352 attttgattgcgattt 8571367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 44944976 - 44944848
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcac----cttcaacgactcaaatccatagtagaatccaaaaataagc 206  Q
    |||||| ||||| |||||||||||| |||||||||| |||| ||||||||||||||    ||||||||| |||||||||||||||||||| ||||||  |    
T  44944976 tgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcactcaccttcaacgattcaaatccatagtagaatcctaaaatagtc 44944877  T
Q  207 aaaatccatcgattttgattgcgatttta 235  Q
    ||||||||||||||||||||| |||||||    
T  44944876 aaaatccatcgattttgattgggatttta 44944848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 130 - 242
Target Start/End: Complemental strand, 8343908 - 8343796
Alignment:
Q  130 taaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccatcgattttgattgcg 229  Q
    |||||| |||||| | | |||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||| ||||| ||||||    
T  8343908 taaatcctaaaatcctggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaatatgaaaaatccatcaattttaattgcg 8343809  T
Q  230 attttaagatttc 242  Q
    |||||| ||||||    
T  8343808 attttacgatttc 8343796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 111 - 235
Target Start/End: Original strand, 14055253 - 14055377
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| || ||||| ||| |||||| ||  |||| ||||||||||||||||||||||||||||||| |||||||||| | |||||| ||||||    
T  14055253 tgttgtgaaaatccccacttatatcctaaaatccaagattttgcgactttcttcaccttcaacgactcaaatctatagtagaattctaaaataggcaaaa 14055352  T
Q  211 tccatcgattttgattgcgatttta 235  Q
    ||||| |||||||||||||||||||    
T  14055353 tccatagattttgattgcgatttta 14055377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 111 - 235
Target Start/End: Original strand, 14365281 - 14365405
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| || ||||| ||| |||||| ||  |||| ||||||||||||||||||||||||||||||| |||||||||| | |||||| ||||||    
T  14365281 tgttgtgaaaatccccacttatatcctaaaatccaagattttgcgactttcttcaccttcaacgactcaaatctatagtagaattctaaaataggcaaaa 14365380  T
Q  211 tccatcgattttgattgcgatttta 235  Q
    ||||| |||||||||||||||||||    
T  14365381 tccatagattttgattgcgatttta 14365405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 4247358 - 4247489
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| || | ||||||| |||||||||| |||| |  ||||||||||| |||||| ||| |||||||||||||||||| |||||| ||||||    
T  4247358 tgttgtcaaaatcccaatttaaatcctaaaattcaggattttgtaactttcttcactttcaacaacttaaatccatagtagaatcccaaaataggcaaaa 4247457  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    | ||||||||||||||||||||||| ||||||    
T  4247458 ttcatcgattttgattgcgattttatgatttc 4247489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 5715292 - 5715422
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||| |||||||||| |||| |||||||| | |||||||||| ||| |||| ||||||||||| | |||||||||||||    
T  5715292 tgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgacttt-tacaccttcaacaacttaaattcatagtagaattccaaaataagcaaaa 5715390  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    | ||||||||||||||| ||||||| ||||||    
T  5715391 ttcatcgattttgattgtgattttacgatttc 5715422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 126 - 235
Target Start/End: Original strand, 39182277 - 39182385
Alignment:
Q  126 gacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccatcgattttgat 225  Q
    |||||||||| ||||||  || |||| ||||||| ||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||| |    
T  39182277 gacttaaatcctaaaatctaggattttgcgactt-cttcaccttcaacgactgaaatccatagtagaatcccaaaataggcaaaatccatcgattttggt 39182375  T
Q  226 tgcgatttta 235  Q
    ||||||||||    
T  39182376 tgcgatttta 39182385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 9685371 - 9685240
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| |||||  ||||||| ||| ||||||| || |||| |||||||| |||||||||||||||||||||||||| ||||||   ||||||  |||||    
T  9685371 tgttgtcaaaatctcgacttatatcctaaaatttaggattttgcgacttttttcaccttcaacgactcaaatccatattagaatttcaaaatagacaaaa 9685272  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    |||||||||||| |||||||||||| ||||||    
T  9685271 tccatcgattttaattgcgattttatgatttc 9685240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 24725604 - 24725473
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| | |||||||||| |||||| ||  ||||  |||||||||||||||||||| |||||||||||||||||||||  |||||| ||||||    
T  24725604 tgttgtcaaaatccagacttaaatcctaaaatccaagattttacgactttcttcaccttcaacaactcaaatccatagtagaatcgcaaaataggcaaaa 24725505  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    |||||| ||||||||| |||||| | ||||||    
T  24725504 tccatcaattttgattacgatttgacgatttc 24725473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 241
Target Start/End: Complemental strand, 8330172 - 8330042
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| | ||| |||||  |||||||||  |||| ||||||||||||||||||||||| |||||||||||||||||||| |||||| | ||||    
T  8330172 tgttgtcaaaatcctgacctaaattctaaaattcatgattttgcgactttcttcaccttcaacgattcaaatccatagtagaatcccaaaataggaaaaa 8330073  T
Q  211 tccatcgattttgattgcgattttaagattt 241  Q
    | ||| |||||| |||||||||||| |||||    
T  8330072 ttcattgattttaattgcgattttacgattt 8330042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 7730469 - 7730339
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| | |||||||||| |||||| |||  ||| ||||||||||||||||| ||| ||||||||||| |||||||| | |||||| | ||||    
T  7730469 tgttgtcaaaatcctgacttaaatcctaaaatccaggtttt-gcgactttcttcacctttaacaactcaaatccacagtagaattccaaaataggaaaaa 7730371  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||||||||||| ||||||| ||||||    
T  7730370 tccatcgattttgattgagattttacgatttc 7730339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 1977707 - 1977785
Alignment:
Q  164 caccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||| | ||||||||||||||||||||| ||||||    
T  1977707 caccttcaacgactcaaatccatagtagaatcctaaaatatgcaaaattcgtcgattttgattgcgattttaggatttc 1977785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 118 - 242
Target Start/End: Original strand, 11324988 - 11325111
Alignment:
Q  118 aaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccatcg 217  Q
    ||||| |||||||||||| |||||||||  |||| | || |||||||||||||||||||||||||||||| |||||| | |||||| ||||||| |||      
T  11324988 aaaatcccgacttaaatcctaaaattcatgattttgggattttcttcaccttcaacgactcaaatccataatagaattctaaaataggcaaaattcat-a 11325086  T
Q  218 attttgattgcgattttaagatttc 242  Q
    ||||||||||||| |||| ||||||    
T  11325087 attttgattgcgaatttacgatttc 11325111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 113 - 242
Target Start/End: Original strand, 17811355 - 17811480
Alignment:
Q  113 ttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatc 212  Q
    |||| ||||||||||||||    |||||||||   |||| | |||||| |||||||||||||||||||||||||||||||||   ||||||  |||||||    
T  17811355 ttgtcaaaattccgactta----ttaaaattcttgattttgtgacttttttcaccttcaacgactcaaatccatagtagaattttaaaatagacaaaatc 17811450  T
Q  213 catcgattttgattgcgattttaagatttc 242  Q
     |||||||||||||||||||||| ||||||    
T  17811451 gatcgattttgattgcgattttacgatttc 17811480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 111 - 231
Target Start/End: Complemental strand, 21846552 - 21846433
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||  |||||||||| |||| |||||||| ||||| |||||||||||| |||||||||||||| | |||| | | ||||    
T  21846552 tgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgacttt-ttcacattcaacgactcacatccatagtagaattctaaaacaggtaaaa 21846454  T
Q  211 tccatcgattttgattgcgat 231  Q
    || ||||||||||||||||||    
T  21846453 tcaatcgattttgattgcgat 21846433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 114 - 242
Target Start/End: Complemental strand, 27510067 - 27509939
Alignment:
Q  114 tgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatcc 213  Q
    |||||||||  ||| ||||||  ||||||  || |||| |||| ||||||||| | |||||| ||||||| ||||||||||  ||||||| ||||||| |    
T  27510067 tgttaaaatatcgaattaaattctaaaataaaggattttgcgattttcttcacatccaacgattcaaatctatagtagaatttaaaaataggcaaaattc 27509968  T
Q  214 atcgattttgattgcgattttaagatttc 242  Q
    ||| |||||||||||||||||| ||||||    
T  27509967 atcaattttgattgcgattttacgatttc 27509939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 235
Target Start/End: Complemental strand, 26617596 - 26617475
Alignment:
Q  118 aaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatcc--atagtagaatcc--aaaaataagcaaaatcc 213  Q
    ||||||| ||||| |||| |||||||||| |||| |||||||| |||||||||||||||  |||| |  |||||||||| |  ||| ||| ||||||||     
T  26617596 aaaattctgactttaatcctaaaattcaggattttgcgacttttttcaccttcaacgacataaattcatatagtagaattctaaaatataggcaaaatct 26617497  T
Q  214 atcgattttgattgcgatttta 235  Q
    ||||||||||||||||||||||    
T  26617496 atcgattttgattgcgatttta 26617475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 119 - 212
Target Start/End: Complemental strand, 21157893 - 21157800
Alignment:
Q  119 aaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatc 212  Q
    |||||| |||||||||||||||||||||  ||| ||||||||  |||| | ||||||||||||||||||| | ||||| |||| ||| ||||||    
T  21157893 aaattctgacttaaatcttaaaattcagggttttgcgactttactcacttacaacgactcaaatccatagcaaaatcctaaaacaagaaaaatc 21157800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 20570944 - 20570872
Alignment:
Q  179 aaatccatagtagaatccaaaaataagcaaaatccatcgattttgattgcgattttaagatttcatacaaaat 251  Q
    ||||| ||||||||||| |||||||  ||||||||||||||||||||||| |||||| |||||| || |||||    
T  20570944 aaatctatagtagaatctaaaaatagacaaaatccatcgattttgattgcaattttacgatttcttataaaat 20570872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 26565755 - 26565653
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||||| | |||||||| ||||||||||||||| |  ||||| ||||| || ||||| |||||| ||||| ||||||  |||||| |||| |    
T  26565755 tgttgtcaaaattctgccttaaatcataaaattcagaattttgtaactttattcacttttaacgattcaaattcatagcagaatctcaaaatatgcaaga 26565656  T
Q  211 tcc 213  Q
    |||    
T  26565655 tcc 26565653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 4574488 - 4574544
Alignment:
Q  126 gacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaat 182  Q
    |||||||||| |||||| |||||||| ||||||||  ||||||||||||| ||||||    
T  4574488 gacttaaatcctaaaatccagaattttgcgactttactcaccttcaacgattcaaat 4574544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 4247557 - 4247592
Alignment:
Q  207 aaaatccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||||||||||||||||||||||| ||||||    
T  4247557 aaaatccatcgattttgattgcgattttatgatttc 4247592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 195
Target Start/End: Complemental strand, 8630029 - 8630001
Alignment:
Q  167 cttcaacgactcaaatccatagtagaatc 195  Q
    |||||||||||||||||||||||||||||    
T  8630029 cttcaacgactcaaatccatagtagaatc 8630001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 17811549 - 17811577
Alignment:
Q  207 aaaatccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||||||    
T  17811549 aaaatccatcgattttgattgcgatttta 17811577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Complemental strand, 24725400 - 24725372
Alignment:
Q  207 aaaatccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||||||    
T  24725400 aaaatccatcgattttgattgcgatttta 24725372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Complemental strand, 24989701 - 24989673
Alignment:
Q  207 aaaatccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||||||    
T  24989701 aaaatccatcgattttgattgcgatttta 24989673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 19578944 - 19579075
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| |||||||| ||||||||| |||||| ||| |||| |||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  19578944 tgttgtcaaaattccaacttaaatcataaaatccaggattttgcgattttcttcaccttcaacgacttaaatccatagtagaatcccaaaataagcaaaa 19579043  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    |||||||||||||||||||| |||| ||||||    
T  19579044 tccatcgattttgattgcgactttacgatttc 19579075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 18843717 - 18843848
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    ||||||||||||||||||||||||| || ||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||  |||||    
T  18843717 tgttgttaaaattccgacttaaatcctataattcaggattttgcgactttcttcaccttcaacgactcaaatccattgtagaatcccaaaatagacaaaa 18843816  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    | |||||||||||||||| ||| || ||||||    
T  18843817 ttcatcgattttgattgcaattatacgatttc 18843848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 111 - 234
Target Start/End: Original strand, 20923720 - 20923843
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||| |||||| |||||||| ||||||||||||||||||||||||  |||||||||||||||||| |||||| |||||     
T  20923720 tgttgtcaaaatcccgacttaaatcctaaaatccagaattttgcgactttcttcaccttcaacgacctaaatccatagtagaatcctaaaataggcaaag 20923819  T
Q  211 tccatcgattttgattgcgatttt 234  Q
    ||||||||||||||||||||||||    
T  20923820 tccatcgattttgattgcgatttt 20923843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 43234870 - 43235001
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| || ||||||||| |||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||| |||||| | ||||    
T  43234870 tgttgtcaaaatcccaacttaaatcctaaaattcaggattttgcgactttcttcaccttcaacgacttaaatccatagtagaatcctaaaataggaaaaa 43234969  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||||||||||| ||||||| ||||||    
T  43234970 tccatcgattttgattgtgattttacgatttc 43235001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 18051657 - 18051526
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||| ||||||  || |||| ||||||||||||| ||||||||||||||||| |||||||||| | |||||| ||||||    
T  18051657 tgttgtcaaaatcccgacttaaatcctaaaatataggattttgcgactttcttcaacttcaacgactcaaatctatagtagaattctaaaataggcaaaa 18051558  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    |||||||||||||||||||||| || ||||||    
T  18051557 tccatcgattttgattgcgattgtacgatttc 18051526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 22645846 - 22645722
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||| |||||| ||| |||| ||||||||||||||||||||||| | |||||||||||| ||||| |||||||| |||     
T  22645846 tgttgtcaaaatcccgacttaaatcctaaaatccagtattttgcgactttcttcaccttcaacgatttaaatccatagtaaaatcccaaaataagtaaat 22645747  T
Q  211 tccatcgattttgattgcgatttta 235  Q
    |||||| ||||||||||||||||||    
T  22645746 tccatctattttgattgcgatttta 22645722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 118 - 242
Target Start/End: Complemental strand, 27340306 - 27340182
Alignment:
Q  118 aaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccatcg 217  Q
    ||||| |||||||||||| ||||||| |  |||| ||||||||||||| ||||||||||||||||| |||||||||||  |||||| ||||||| |||||    
T  27340306 aaaatcccgacttaaatcataaaatttatgattttgcgactttcttcatcttcaacgactcaaatctatagtagaatcttaaaataggcaaaattcatcg 27340207  T
Q  218 attttgattgcgattttaagatttc 242  Q
    |||||||||| |||||||| |||||    
T  27340206 attttgattgagattttaatatttc 27340182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 21059282 - 21059152
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||| ||||||| ||||||  || |||| |||||||||||||| ||||||||||||||||||| |||||||||  ||||| ||||||    
T  21059282 tgttgtcaaaatcccgatttaaatcctaaaatctaggattttgcgactttcttcactttcaacgactcaaatccat-gtagaatccctaaataggcaaaa 21059184  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    | ||||||||||||||||||||||| ||||||    
T  21059183 ttcatcgattttgattgcgattttacgatttc 21059152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 111 - 241
Target Start/End: Complemental strand, 23172559 - 23172425
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaa- 209  Q
    |||||| ||||| |||||||||||| ||||||| || |||| ||||||||||||| ||||||||||| |||||||||||||||||| ||||||  ||||     
T  23172559 tgttgtcaaaatcccgacttaaatcctaaaatttaggattttgcgactttcttcatcttcaacgacttaaatccatagtagaatcccaaaatagacaaaa 23172460  T
Q  210 ---atccatcgattttgattgcgattttaagattt 241  Q
       ||| |||||||||||| ||||||||| |||||    
T  23172459 ttcatcgatcgattttgatcgcgattttacgattt 23172425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 38158381 - 38158250
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| |||||||||||||||||| ||||||  || |||| ||||||||||| || |||||| ||||||||||| |||||||||| ||||||  |||||    
T  38158381 tgttgtcaaaattccgacttaaatcctaaaatctaggattttgcgactttcttgactttcaacaactcaaatccagagtagaatcccaaaatagacaaaa 38158282  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    ||||| ||||||| |||  |||||| ||||||    
T  38158281 tccattgattttggttgttattttacgatttc 38158250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 242
Target Start/End: Complemental strand, 41688775 - 41688661
Alignment:
Q  127 acttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccatcgattttgatt 226  Q
    ||||||||| |||||||| || ||| || | |||||||||||||||||||| ||||  |||||| ||| | |||||||||||||| ||||||||||||||    
T  41688775 acttaaatcctaaaattcggatttt-gcaattttcttcaccttcaacgacttaaatttatagtaaaattctaaaataagcaaaattcatcgattttgatt 41688677  T
Q  227 gcgattttaagatttc 242  Q
    ||||||||| ||||||    
T  41688676 gcgattttacgatttc 41688661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 242
Target Start/End: Original strand, 19979648 - 19979732
Alignment:
Q  158 tttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccatcgattttgattgcgattttaagatttc 242  Q
    |||||||| |||||||||||||||| ||| ||||||||| |||| | ||||||||||| ||||||||||||||||||| ||||||    
T  19979648 tttcttcatcttcaacgactcaaattcatggtagaatcccaaaacacgcaaaatccatggattttgattgcgattttacgatttc 19979732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 20320992 - 20321074
Alignment:
Q  158 tttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaatccatcgattttgattgcgattttaagatt 240  Q
    ||||||||||||||| |||| |||||||||||| ||| | ||||||   ||||| |||| | |||||||||||||||| ||||    
T  20320992 tttcttcaccttcaatgactaaaatccatagtaaaattccaaaatagataaaattcatcaactttgattgcgattttacgatt 20321074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 19042516 - 19042444
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatc 183  Q
    |||||| ||||| || ||||||||  ||||||| |  |||| | |||||||||||||||||||||||||||||    
T  19042516 tgttgtcaaaatcccaacttaaattctaaaatttaagattttgtgactttcttcaccttcaacgactcaaatc 19042444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 276
Target Start/End: Original strand, 26021408 - 26021442
Alignment:
Q  242 catacaaaatcgcatgattttaaagggttttgaag 276  Q
    |||||||||||||| ||||||||||||||||||||    
T  26021408 catacaaaatcgcaggattttaaagggttttgaag 26021442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 24106661 - 24106714
Alignment:
Q  129 ttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaat 182  Q
    ||||||| |||||||||| |||| || ||||||||||||  |||||||||||||    
T  24106661 ttaaatcataaaattcaggattttgcaactttcttcaccagcaacgactcaaat 24106714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 18843916 - 18843944
Alignment:
Q  207 aaaatccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||||||    
T  18843916 aaaatccatcgattttgattgcgatttta 18843944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 19579144 - 19579172
Alignment:
Q  207 aaaatccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||||||    
T  19579144 aaaatccatcgattttgattgcgatttta 19579172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 20321144 - 20321172
Alignment:
Q  207 aaaatccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||||||    
T  20321144 aaaatccatcgattttgattgcgatttta 20321172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Complemental strand, 21059085 - 21059057
Alignment:
Q  207 aaaatccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||||||    
T  21059085 aaaatccatcgattttgattgcgatttta 21059057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 24647941 - 24647973
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaatt 143  Q
    |||||| ||||||||||||||||||||||||||    
T  24647941 tgttgtcaaaattccgacttaaatcttaaaatt 24647973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 276
Target Start/End: Complemental strand, 43005940 - 43005904
Alignment:
Q  240 ttcatacaaaatcgcatgattttaaagggttttgaag 276  Q
    |||||||||||||||| |||||| |||||||||||||    
T  43005940 ttcatacaaaatcgcaggatttttaagggttttgaag 43005904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 111 - 242
Target Start/End: Original strand, 8445 - 8576
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| || ||||||||| |||||| ||  |||| ||||||||||||||||||||||||| ||||| || ||||||||| |||||||||||||    
T  8445 tgttgtcaaaatccctacttaaatcctaaaatccacgattttgcgactttcttcaccttcaacgacttaaatctattgtagaatcccaaaataagcaaaa 8544  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    ||||| ||||||||||||||||||| ||||||    
T  8545 tccattgattttgattgcgattttacgatttc 8576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 8642 - 8670
Alignment:
Q  207 aaaatccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||||||    
T  8642 aaaatccatcgattttgattgcgatttta 8670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 7582 - 7451
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||||| ||| |||||||||||  |||||||||| |||| ||||||||||| |||||||||||   |||||||||||||||||| |||||| ||||||    
T  7582 tgttgttagaatcccgacttaaattctaaaattcaggattttgcgactttctttaccttcaacgaacaaaatccatagtagaatcctaaaataggcaaaa 7483  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    | |||||||||| |||||||||||| ||||||    
T  7482 ttcatcgattttaattgcgattttacgatttc 7451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 228 - 103
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagc-aaa 209  Q
    ||||| ||| || |||||||||||| |||||| ||| |||| |||||||||||||| ||||||||||||||||||||||| ||| | |||||| || |||    
T  228 tgttgataagatcccgacttaaatcctaaaatgcaggattttgcgactttcttcacgttcaacgactcaaatccatagtaaaattctaaaataggcgaaa 129  T
Q  210 atccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||| |||||||    
T  128 atccatcgattttgattgagatttta 103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 93831 - 93702
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| |||||||||||| |||||| |||||||| |  | |||||||||| ||||| |||||||||||||| ||||| | |||||| || |||    
T  93831 tgttgtcaaaatcccgacttaaatcctaaaatccagaattttg--attttcttcaccctcaacaactcaaatccatagaagaattctaaaataggcgaaa 93734  T
Q  211 tccatcgattttgattgcgattttaagatttc 242  Q
    ||||||||||||||||||||||||| ||||||    
T  93733 tccatcgattttgattgcgattttacgatttc 93702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 93633 - 93599
Alignment:
Q  207 aaaatccatcgattttgattgcgattttaagattt 241  Q
    ||||||||||||||||||||||||||||| |||||    
T  93633 aaaatccatcgattttgattgcgattttacgattt 93599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 48915 - 48816
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| |||||||||||||||||| ||||||  ||||||| || ||||| ||||||||||||||||||||||||||  ||||||| |||| ||||||||    
T  48915 tgttgtgaaaattccgacttaaatcctaaaatctagaattttgcaactttattcaccttcaacgactcaaatccatatgagaatcccaaaa-aagcaaaa 48817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 61468 - 61410
Alignment:
Q  153 gcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaat 211  Q
    |||||||| ||| |||||||||  |||||||||||  ||||||| ||||||||||||||    
T  61468 gcgactttattcgccttcaacggttcaaatccatatgagaatcccaaaataagcaaaat 61410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 276
Target Start/End: Complemental strand, 48776 - 48740
Alignment:
Q  240 ttcatacaaaatcgcatgattttaaagggttttgaag 276  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  48776 ttcatacaaaaccgcatgattttaatgggttttgaag 48740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 37293 - 37191
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaaa 210  Q
    |||||| ||||| ||||||||||| |||||||||||||||| || | ||| |||||||||||| |||||||||||||| ||||||  |||||| | ||||    
T  37293 tgttgtcaaaatgccgacttaaattttaaaattcagaattttgcaattttattcaccttcaacaactcaaatccatagcagaatcttaaaataggtaaaa 37194  T
Q  211 tcc 213  Q
    |||    
T  37193 tcc 37191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 194
Target Start/End: Complemental strand, 35186 - 35103
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaat 194  Q
    |||||| |||||  ||||||||||  ||||||||| ||||| |  ||||| |||||||| |||||||||||| ||| |||||||    
T  35186 tgttgtcaaaatctcgacttaaattctaaaattcataattttggaactttattcacctttaacgactcaaattcattgtagaat 35103  T

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Target: scaffold0603 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 209
Target Start/End: Complemental strand, 9147 - 9049
Alignment:
Q  111 tgttgttaaaattccgacttaaatcttaaaattcagaatttcgcgactttcttcaccttcaacgactcaaatccatagtagaatccaaaaataagcaaa 209  Q
    |||||| ||||| | || |||||| |||||||  || |||| | || ||| ||||||||||||||||||||||||||| | |||||  ||||| |||||    
T  9147 tgttgtcaaaatcctgatttaaattttaaaatgtaggattttgtgattttattcaccttcaacgactcaaatccatagcaaaatccttaaataggcaaa 9049  T

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Target: scaffold0603; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Complemental strand, 8887 - 8859
Alignment:
Q  207 aaaatccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||||||    
T  8887 aaaatccatcgattttgattgcgatttta 8859  T

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Target: scaffold0017 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 129031 - 128985
Alignment:
Q  167 cttcaacgactcaaatccatagtagaatc-caaaaataagcaaaatc 212  Q
    |||||||||||||||||||||| |||||| ||||||||| |||||||    
T  129031 cttcaacgactcaaatccatagcagaatctcaaaaataaacaaaatc 128985  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 235
Target Start/End: Complemental strand, 56353 - 56325
Alignment:
Q  207 aaaatccatcgattttgattgcgatttta 235  Q
    |||||||||||||||||||||||||||||    
T  56353 aaaatccatcgattttgattgcgatttta 56325  T

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