View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1694-Insertion-5 (Length: 144)
Name: NF1694-Insertion-5
Description: NF1694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1694-Insertion-5 |
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| [»] scaffold0047 (1 HSPs) |
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| [»] scaffold0004 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 97; Significance: 5e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 5e-48
Query Start/End: Original strand, 31 - 143
Target Start/End: Complemental strand, 24172953 - 24172841
Alignment:
| Q |
31 |
agaattttttctattaattacataaaagtcctaatacaaataaaaaacaaatccaaaacttgaaagtttggatcttgttttccacttttgtcgttgattt |
130 |
Q |
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| T |
24172953 |
agaattttttcaactaattacataaaagttctaatacaaataaaaaacaaatccaaaacttgaaagtttggatcttgttttccatttttgtcgttgattt |
24172854 |
T |
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| Q |
131 |
tcttttaggacct |
143 |
Q |
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| T |
24172853 |
tcttttaggacct |
24172841 |
T |
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Target: scaffold0047 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 8456 - 8379
Alignment:
| Q |
36 |
tttttctattaattacataaaagtcctaatacaaataaaaa-acaaatccaaaacttgaaagtttggatcttgttttc |
112 |
Q |
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| T |
8456 |
tttttctactacttacataaaagtcctaaaacaaataaaaattaaaatccaagacttgaaagcttgaatcttcttttc |
8379 |
T |
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Target: scaffold0004 (Bit Score: 33; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 119
Target Start/End: Original strand, 354598 - 354682
Alignment:
| Q |
36 |
tttttctattaattacataaaagtcctaatacaaataaaaaaca-aatccaaaacttgaaagtttggatcttgttttccactttt |
119 |
Q |
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| T |
354598 |
tttttctactacttacataaaagtcctaaaacaaataaaaattagaatctaagacttgaaagcttgaatcttcttttccgctttt |
354682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 119
Target Start/End: Original strand, 113612 - 113694
Alignment:
| Q |
36 |
tttttctattaattacataaaagtcctaatacaaataaaaaacaaatccaaaacttgaaagtttggatcttgttttccactttt |
119 |
Q |
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| T |
113612 |
tttttctactacttacataaa-gtcctaatataaataaaaataaaatccaagactagaaagcttgaatcttcttttccgctttt |
113694 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 15889733 - 15889662
Alignment:
| Q |
48 |
ttacataaaagtcctaatacaaataaaaaacaaatccaaaacttgaaagtttggatcttgttttccactttt |
119 |
Q |
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| T |
15889733 |
ttacataaaagtcctaatacaaataaaaataaaatcgaagactagaaagcctgaatcttcttttccgctttt |
15889662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 119
Target Start/End: Original strand, 8595478 - 8595560
Alignment:
| Q |
36 |
tttttctattaattacataaaagtcctaatacaaataaaaaacaaatccaaaacttgaaagtttggatcttgttttccactttt |
119 |
Q |
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| T |
8595478 |
tttttctactacttaca-aatagtcctaaaacaaataaaaataaaatccaagacttgaaggcttgaatcttcttttccgctttt |
8595560 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 4183129 - 4183173
Alignment:
| Q |
36 |
tttttctattaattacataaaagtcctaatacaaataaaaaacaa |
80 |
Q |
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| T |
4183129 |
tttttctattgctcacataaaagtcctaatacaaataataaacaa |
4183173 |
T |
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