View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16940_high_4 (Length: 376)
Name: NF16940_high_4
Description: NF16940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16940_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 42754971 - 42754612
Alignment:
| Q |
1 |
atatatttttgtacacttaaaaccagtttatccgtttggacaagtgaaggtactgaatgagagttaatggagcattgagcttaagaagataagagaaggt |
100 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42754971 |
atatatttctctacacttaaaaccagtttatccgtttggacaagtgaaggtactgaatgagagttaatggagcattgagcttaagcagataagagaaggt |
42754872 |
T |
|
| Q |
101 |
gaaaaacaatttgagagaatgaagagaatctatctgaattgtggacaattgggtctcacccctcctacttctactacaccccatagctctgcacattcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42754871 |
gaaaaacaatttgagagaatgaagagaatctatctgaattgtggacaattgggtctcacccctcctacttctactacaccccatagctctacacattcat |
42754772 |
T |
|
| Q |
201 |
gtaataagcgtccttcaaggttcatgatatttgcttcttcatggcttccaaattatgcttctcttaacaataccttcattgcttctgcttcttcttccct |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
42754771 |
gtaataagcgtccttcacggttcatgatatttgcttcttcatggcttccaaattatgcttctcttaacaacaccttcattgcttctgcttcctcttccct |
42754672 |
T |
|
| Q |
301 |
cggtggttcaggtcctcactcttcttctatctatacttcaccattgtttgtttatttttc |
360 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42754671 |
cggtggttcaggtcctcactcttcttctatctatacttcaccattgtttgtttatttttc |
42754612 |
T |
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