View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16940_high_5 (Length: 283)
Name: NF16940_high_5
Description: NF16940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16940_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 40402181 - 40402438
Alignment:
| Q |
18 |
tagaactaaataataaagaataataataaaatcactcaattgagacagtaaagaaaa-cataaacaatacatttgactcttatcaataaagaaaaagcac |
116 |
Q |
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| T |
40402181 |
tagaactaaataataaagaataataataaaatcacccaattgagacagtaaagaaaaacataaacaatacatttgactcttatcaataaagaaaaagcac |
40402280 |
T |
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| Q |
117 |
ttctaataatttgactctttaaaactgtttcttgctcttgtgtaatgtgtaccctacatctaattaatgctttgtttgtatctgcattcattcaattgag |
216 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40402281 |
ttgtaataatttgactctttaaaactgtttcttgctcttgtgtaatgtgtaccctacatctaattaatgctttgtttgtatctgcattcattcaattgag |
40402380 |
T |
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| Q |
217 |
tttaaaggtaccctcaacagttttaagtaatacataccctacatcttaattttcttct |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40402381 |
tttaaaggtaccctcaacagttttaagtaatacataccctacatcttaattttcttct |
40402438 |
T |
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