View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16940_high_6 (Length: 263)
Name: NF16940_high_6
Description: NF16940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16940_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 11008972 - 11008732
Alignment:
| Q |
14 |
attatttacaatcgcgtggatcttccacatccatttgttag--tgagtgctactaattaacactcaatatgtcactatgctttatgtttgctcttgcaga |
111 |
Q |
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| T |
11008972 |
attatttacaatcgcgtggatcttccacatccatttgttagagtgagtgctactaaataacactcaatatgtcactatgctttatgtttgctcttgcaga |
11008873 |
T |
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| Q |
112 |
ttactggaataacgcggcttggatagttgcacgtttatcattcggcttaggtaagcaagccctcgcattctcttaagtcaatgtaagacaaagttcagaa |
211 |
Q |
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| T |
11008872 |
ttactggaataacgcggcttggatagttgcacgtttatcattcggcttaggtaagcaagccctcgcattctcttaagtcaatgtaacacaaagttcagaa |
11008773 |
T |
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| Q |
212 |
aacaaatttgtagtacaagaaatatttttagattgaaggcc |
252 |
Q |
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| T |
11008772 |
aacaaatttgtagtacaagaaatatttttagattgaaggcc |
11008732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 150
Target Start/End: Complemental strand, 11034367 - 11034230
Alignment:
| Q |
15 |
ttatttacaatcgcgtggatcttccacatccatttgttag--tgagtgctactaattaacactcaatatgtcactatgctttatgtttgctcttgcagat |
112 |
Q |
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| T |
11034367 |
ttatttacaattacatcgatcttccacacccatttgttagagtgagtgctactaattaacactcaatctgttactatgctttgtgtatgtccttgcagct |
11034268 |
T |
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| Q |
113 |
tactggaataacgcggcttggatagttgcacgtttatc |
150 |
Q |
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| T |
11034267 |
tactggaataatgtggcttggatagttgcatgtttatc |
11034230 |
T |
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