View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16940_low_1 (Length: 523)
Name: NF16940_low_1
Description: NF16940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16940_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 34733226 - 34733018
Alignment:
| Q |
8 |
ccaacaatatacaaattgagttttgtataaaatttatttgaaaatagaagaagtaacccatgcgaaagaataaacaaatttagttttttaatcataatta |
107 |
Q |
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| T |
34733226 |
ccaacaatatacaaattgagttttgtataaaatttatttgaaaatagaagaagtaacccatgcgaaagaataaacaaatttagttttttaatcataatta |
34733127 |
T |
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| Q |
108 |
atagttatattaaatgaagaaaactatttcaaatttttatttgttttaaaagattcaaattttaaatctaaatagtacataagaataagataggaacata |
207 |
Q |
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| T |
34733126 |
atagttatattaaatgaagaaaactatttcaaatttttatttgttttaaaagattcaaattttaaatct-aatagtacataagaataagatagggacata |
34733028 |
T |
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| Q |
208 |
ggtttgattt |
217 |
Q |
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| T |
34733027 |
ggtttgattt |
34733018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 298 - 508
Target Start/End: Complemental strand, 34732951 - 34732740
Alignment:
| Q |
298 |
cacgtatattagtatgtgttctgttctgcttgtgtttgtcgtttatgcctccactatgactgttccacttccctctgctctgctctgctcattccaaatg |
397 |
Q |
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| T |
34732951 |
cacgtatattagtatgtgttctgttctgcttgtgtttgtcgtttatgcctccactatgactgttccacttccctctgctctgctctgctcattccaaatg |
34732852 |
T |
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| Q |
398 |
gttggaacgnnnnnnnccgttcaaacaaac-acactcccatttctttgtttcaacattctagtatttttctctttctctgaatctcatttttgctgataa |
496 |
Q |
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| T |
34732851 |
gttggaacgtttttttccgttcaaacaaacaacactcccatttctttgtttcaacattctagtatgtttctctttctctgaatctcatttttgctgataa |
34732752 |
T |
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| Q |
497 |
aaatgaacaaga |
508 |
Q |
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| T |
34732751 |
aaatgaacaaga |
34732740 |
T |
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