View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16940_low_3 (Length: 401)
Name: NF16940_low_3
Description: NF16940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16940_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 14 - 384
Target Start/End: Complemental strand, 38398889 - 38398519
Alignment:
| Q |
14 |
aagaatatactaagagcattgaaccgcagagtacttgaaattgctccatgttccgttggaatccttgtagctcgtgctaattcaatgcagaaaccaacat |
113 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38398889 |
aagaaaatactaagagcattgaaccgcagagtacttgaaattgctccatgttctgttggaatccttgtagctcgtgctaattcaatgcagaaaccaacat |
38398790 |
T |
|
| Q |
114 |
caataacatcagaatgttccatgactcaattagccatcatatatttaggtggaaatgacgatgatgaagaggtcttatgtttagcaaaacgagcgatgaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38398789 |
caataacatcagaatgttccatgactcaattagccatcatatatttaggtggaaatgacgatgatgaagaggtcttatgtttagcaaaacgagcgatgaa |
38398690 |
T |
|
| Q |
214 |
taatcctaagatcaacctagttgtttaccgtcttgttgctaaggaaaacatagtagaattggaggaattaacggtaattggcgatgaaatgttggaagaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38398689 |
taatcctaagatcaacctagttgtttaccgtcttgttgctaaggaaaacatagtagaattggaggaattaacggtaattggcgatgaaatgttggaagaa |
38398590 |
T |
|
| Q |
314 |
ttgaaaaatgctgaaaatgtgaggtatcaagaaatttttactgagaatggatcacaaacagcatcttttct |
384 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38398589 |
ttgaaaaatgctgaaaatgtgaggtatcaagaagtttttactgagaatggatcacaaacagcatcttttct |
38398519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 21 - 384
Target Start/End: Complemental strand, 38381253 - 38380890
Alignment:
| Q |
21 |
tactaagagcattgaaccgcagagtacttgaaattgctccatgttccgttggaatccttgtagctcgtgctaattcaatgcagaaaccaacatcaataac |
120 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || | |
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| T |
38381253 |
tactaagagcattgaaccggagagtacttgaaattgctccatgttccgttggaatccttgtaactcgtgctaattcaatgcagaaaccaacatctattaa |
38381154 |
T |
|
| Q |
121 |
atcagaatgttccatgactcaattagccatcatatatttaggtggaaatgacgatgatgaagaggtcttatgtttagcaaaacgagcgatgaataatcct |
220 |
Q |
| |
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|||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38381153 |
atcagaatattccactactcgattagccatcatatatttaggtggaaatgacgatgatgaagaggtcttatgtttagcaaaacgagcgatgaataatcct |
38381054 |
T |
|
| Q |
221 |
aagatcaacctagttgtttaccgtcttgttgctaaggaaaacatagtagaattggaggaattaacggtaattggcgatgaaatgttggaagaattgaaaa |
320 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| || | ||||||||| |||||||||||||||||||| ||| |
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| T |
38381053 |
aagatcaacctagttgtttaccgtcttattgctaaggaaaacatagaagaattggaggagttcatggtaattggtgatgaaatgttggaagaatttaaac |
38380954 |
T |
|
| Q |
321 |
atgctgaaaatgtgaggtatcaagaaatttttactgagaatggatcacaaacagcatcttttct |
384 |
Q |
| |
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|||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||| |
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| T |
38380953 |
atgctgaaaatgtgaggtatcaagaagttttcactaagaatggatcacaaacagcatcttttct |
38380890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 21 - 384
Target Start/End: Complemental strand, 38390128 - 38389756
Alignment:
| Q |
21 |
tactaagagcattgaaccgcagagtacttgaaattgctccatgttccgttggaatccttgtagctcgtgctaattcaatgcagaaaccaaca-------- |
112 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
38390128 |
tactaagagcattgaaccgcagagtactcgaaattgctccatgttccgttggaatccttgtaactcgtgctaattcaatgccgaaaccaacactaacaac |
38390029 |
T |
|
| Q |
113 |
-tcaataacatcagaatgttccatgactcaattagccatcatatatttaggtggaaatgacgatgatgaagaggtcttatgtttagcaaaacgagcgatg |
211 |
Q |
| |
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|||||||||| ||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38390028 |
atcaataacattagaatattccactactcgattagccatcatatatttaggtggaaatgacgatgatgaagaggtcttatgtttagcaaaacgaatgatg |
38389929 |
T |
|
| Q |
212 |
aataatcctaagatcaacctagttgtttaccgtcttgttgctaaggaaaacatagtagaattggaggaattaacggtaattggcgatgaaatgttggaag |
311 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||| ||| | ||||||||| |||| ||||||| |||| ||||||||| |||||||||||||||| |
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| T |
38389928 |
aataatcctaggatcaacctagttgtttactgtcttgtttctaggaaaaacatagcagaagtggaggagttaatggtaattggtgatgaaatgttggaag |
38389829 |
T |
|
| Q |
312 |
aattgaaaaatgctgaaaatgtgaggtatcaagaaatttttactgagaatggatcacaaacagcatcttttct |
384 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38389828 |
aattgaaacatgctgaaaatgtgaggtatcaagaagtttttactgagaatggatcacaaacagcatcttttct |
38389756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 384
Target Start/End: Original strand, 37841015 - 37841369
Alignment:
| Q |
21 |
tactaagagcattgaaccgcagagtacttgaaattgctccatgttccgttggaatccttgtagctcgtgctaattcaatgcagaaaccaacatcaataac |
120 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| | |||||||||||||| | |||||||||| |
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| T |
37841015 |
tactaagagcattgaaccgcaaagtacttgaaattgctccatgttccgttggaatacttgtaacccgtgctaattcaataccgaaaccaaca-------- |
37841106 |
T |
|
| Q |
121 |
atcagaatgttccatgactcaattagccatcatatatttaggtggaaatgacgatgatgaagaggtcttatgtttagcaaaacgagcgatgaataatcct |
220 |
Q |
| |
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||||||| ||| | |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||| | |
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| T |
37841107 |
-tcagaatattctaatactcgattagccatcatatatttaggcggaaatgacgatgatgaagaggtcttatgtttagcaaaaagagcaatgaataatcat |
37841205 |
T |
|
| Q |
221 |
aagatcaacctagttgtttaccgtcttgttgctaaggaaaacatagtagaattggaggaattaacggtaattggcgatgaaatgttggaagaattgaaaa |
320 |
Q |
| |
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| ||||||||| |||||||| ||||||||||||||||| ||||| | |||||||||||| |||| ||||||||| |||||||||||||||||||||| | |
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| T |
37841206 |
aggatcaacctggttgtttatcgtcttgttgctaaggagaacattgaagaattggaggagttaatggtaattggagatgaaatgttggaagaattgagac |
37841305 |
T |
|
| Q |
321 |
atgctgaaaatgtgaggtatcaagaaatttttactgagaatggatcacaaacagcatcttttct |
384 |
Q |
| |
|
||||||||||||||| |||| ||||| |||| ||||||||||||||| |||| ||||||||||| |
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|
| T |
37841306 |
atgctgaaaatgtgaagtatgaagaagttttcactgagaatggatcagaaacggcatcttttct |
37841369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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