View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16940_low_4 (Length: 391)
Name: NF16940_low_4
Description: NF16940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16940_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 1351131 - 1351489
Alignment:
| Q |
18 |
tttcaaaattcagtatcatcacttagtgatccaagaaggggattgagtagact---ttagttttgagattgtagaaagaaatctaatgatagactttcca |
114 |
Q |
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| T |
1351131 |
tttcaaaattcagtatcatcacttagtgatccaagaaggggattgagtagactcctttagttttgagattgtagaaagaaatctaatgatagactttcca |
1351230 |
T |
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| Q |
115 |
tatctcaattctctatcttagttatggaatttcaaaaccttataatttaatcttattattcttcatgagtataaccattatcaaatcctaaatatcgaga |
214 |
Q |
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| T |
1351231 |
tatctcaattctctatcttagttatggaatttcaaaaccttatcatttaatcttattattcttcatgtgtataaccattatcaaatcttaaatatcgaga |
1351330 |
T |
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| Q |
215 |
gacgaacgtaaaggtgaagcttgatattaacaaatacgattatataaccatataactatcttatcttagacatcaattgatagacggaaagttgaatatt |
314 |
Q |
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| T |
1351331 |
gacgaacttaaaggtgaagtttgatattaacaaatacgattatataatcatataactatcttatcttagacatcaattgatagacggaaaggtgaatatt |
1351430 |
T |
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| Q |
315 |
gatgtgagacgtaaataaacgataaattgatttgaattttttaattcgaatatattttt |
373 |
Q |
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| T |
1351431 |
gatgtgagacgtaaataaacgataaattgatttgaattttttaattcaaatatattttt |
1351489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 177
Target Start/End: Original strand, 38795194 - 38795302
Alignment:
| Q |
69 |
ctttagttttgagattgtagaaagaaatctaatgatagactttccat-atctcaattctctatcttagttatggaatttcaaaaccttataatttaatct |
167 |
Q |
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| T |
38795194 |
ctttagttttgggattgtggaatgaaattcaatgatggattttccataatcccaattctctatttttgttctgg-atttcaaaaccttctaactcaatct |
38795292 |
T |
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| Q |
168 |
tattattctt |
177 |
Q |
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| T |
38795293 |
tatcattctt |
38795302 |
T |
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