View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16941_high_13 (Length: 317)

Name: NF16941_high_13
Description: NF16941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16941_high_13
NF16941_high_13
[»] chr7 (1 HSPs)
chr7 (1-294)||(34335442-34335734)


Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 34335442 - 34335734
Alignment:
Q  1 gctatgatggagttaggggagggactatgtaaactgagaaagatggagttccctaatggaccgtttcttaagtttgagaaagatatttcagcagttttgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34335442 gctatgatggagttaggggagggactatgtaaactgagaaagatggagttccctaatggaccgtttcttaagtttgagaaagatatttcagcagttttgg 34335541  T
Q  101 aatttatctaccagacacaaatagagttagctgcatgtgagtaatttcattcttgaaatgttaggtatcacatgatacatgcaagttgtatcttaatccg 200  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34335542 aatttatctaccagacgcaaatagagttagctgcatgtgagtaattccattcttg-aatgttaggtatcacatgatacatgcaagttgtatcttaatccg 34335640  T
Q  201 aatcaaaatcgaactcaacgaacacaaatgttatatgattggttttggagaaattacannnnnnnnaacttgaatttgagcaggtagtgatgat 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  34335641 aatcaaaatcgaactcaacgaacacaaatgttatatgattggttttggagaaattacattttttttaacttgaatttgagcaggtagtgatgat 34335734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University