View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16941_high_14 (Length: 302)
Name: NF16941_high_14
Description: NF16941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16941_high_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 30 - 292
Target Start/End: Original strand, 9123166 - 9123426
Alignment:
| Q |
30 |
atatatattgaatatgaatataatttcttacatgacagttccttcctataatacatgcattacaatcagctgcaatcattcctatcgataaaaagctaat |
129 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||| | ||| || ||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
9123166 |
atatatattgaatatgaatataaattcttacatga-agttccttcctttgata-atacattacaatcagctgcagtcattcctaaatataaaaagctaat |
9123263 |
T |
|
| Q |
130 |
taatcgagaatgataatttctccttcttcccaatctctgctaagaaatttctcctcgttcaaatctgtaactcccattatctcatcctttagaaccaacc |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
9123264 |
taatcgagaatgataatttctccttcttcccaatctctgttaagaaatttctcctcattcaaatctgtaactcccataatatcatcctttagaaccaacc |
9123363 |
T |
|
| Q |
230 |
ctacaaatgtcttcaatggattcaacttgttgcaatcttgcaatgaatgaccacacaggttct |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
9123364 |
ctacaaatgtcttcaatggattcaacttgttgcaatcttgcaatgaatgaccgcacagattct |
9123426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 30 - 292
Target Start/End: Original strand, 9131273 - 9131533
Alignment:
| Q |
30 |
atatatattgaatatgaatataatttcttacatgacagttccttcctataatacatgcattacaatcagctgcaatcattcctatcgataaaaagctaat |
129 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||| | ||| || ||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
9131273 |
atatatattgaatatgaatataaattcttacatga-agttccttcctttgata-atacattacaatcagctgcagtcattcctaaatataaaaagctaat |
9131370 |
T |
|
| Q |
130 |
taatcgagaatgataatttctccttcttcccaatctctgctaagaaatttctcctcgttcaaatctgtaactcccattatctcatcctttagaaccaacc |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
9131371 |
taatcgagaatgataatttctccttcttcccaatctctgttaagaaatttctcctcattcaaatctgtaactcccataatatcatcctttagaaccaacc |
9131470 |
T |
|
| Q |
230 |
ctacaaatgtcttcaatggattcaacttgttgcaatcttgcaatgaatgaccacacaggttct |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
9131471 |
ctacaaatgtcttcaatggattcaacttgttgcaatcttgcaatgaatgaccgcacagattct |
9131533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 30 - 292
Target Start/End: Original strand, 24525030 - 24525294
Alignment:
| Q |
30 |
atatatattgaatatgaatataatttcttacatgacagttccttcctat---aatacatgcattacaatcagctgcaatcattcctatcgataaaaagct |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||| |||| |||||||||||| ||||||||||| |
|
|
| T |
24525030 |
atatatattgaatatgaatataatttcttacatga-agttccttcctatgataatacatgcattgtaattagctacaatcattcctaaagataaaaagct |
24525128 |
T |
|
| Q |
127 |
aattaatcgagaatgataatttctccttcttcccaatctctgctaagaaatttctcctcgttcaaatctgtaactcccattatctcatcctttagaacca |
226 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| |||||||| | |||||||| ||||||||||||||||||| |
|
|
| T |
24525129 |
aattaatcgagaatgataatttctccatcttcccaatctctgttaagaaacttctcctcattcaaatcattcactcccataatctcatcctttagaacca |
24525228 |
T |
|
| Q |
227 |
accctacaaatgtcttcaatggattcaacttgttgcaatcttgcaatgaatgaccacacaggttct |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
24525229 |
accctacaaatgtcttcaatggattcaacttgttgcaatcttgcaatgaatgaccgcacagattct |
24525294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 100 - 237
Target Start/End: Complemental strand, 9039096 - 9038960
Alignment:
| Q |
100 |
tgcaatcattcctatcgataaaaagctaattaatcgagaatgataatttctccttcttcccaatctctgctaagaaatttctcctcgttcaaatctgtaa |
199 |
Q |
| |
|
|||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| | |
|
|
| T |
9039096 |
tgcagtcattcctaaagataaaaaactaattaatcgagaatgataatttctccttcttcccaat-tctgttaagaaatttctcctcgttcaaatctgtca |
9038998 |
T |
|
| Q |
200 |
ctcccattatctcatcctttagaaccaaccctacaaat |
237 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| |||||| |
|
|
| T |
9038997 |
ctcccataatctcatcctttaaaaccaaccccacaaat |
9038960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 39815150 - 39815109
Alignment:
| Q |
117 |
ataaaaagctaattaatcgagaatgataatttctccttcttc |
158 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39815150 |
ataaaaagctaattaatcgagaatgataacttctccttcttc |
39815109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University