View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16941_high_1_N (Length: 428)

Name: NF16941_high_1_N
Description: NF16941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16941_high_1_N
NF16941_high_1_N
[»] chr5 (3 HSPs)
chr5 (105-248)||(23176698-23176847)
chr5 (24-100)||(23172878-23172954)
chr5 (318-363)||(23176917-23176962)


Alignment Details
Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 105 - 248
Target Start/End: Original strand, 23176698 - 23176847
Alignment:
Q  105 gagttgttgacaatggaaggccaacaatttttaattatgagagtcacgtcaaaact------ttctctgctcaaaactttataagaggtccatgttagat 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||| || | |||||||||||||||||    
T  23176698 gagttgttgacaatggaaggccaacaatttttaattatgagagtcacgtcaaaactacgtacttctctgctcaaaacattctgagaggtccatgttagat 23176797  T
Q  199 ggatccataaatatatgttttttaaaatgaacctctcaaaaaattgttca 248  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  23176798 ggatacataaatatatgttttttaaaatgatcctctcaaaaaattgttca 23176847  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 23172878 - 23172954
Alignment:
Q  24 tcatcagctatataacatgtagatttacagtaccaaaaactgttacttttttattgagttcaattttatcttgattc 100  Q
    |||| |||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  23172878 tcatgagctatattacatgtagatttacagtaccaattactgttacttttttattgagttcaattttatcttgattc 23172954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 363
Target Start/End: Original strand, 23176917 - 23176962
Alignment:
Q  318 gaccctttatcttttagttatcaacactgttagtttgtcctcgtga 363  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  23176917 gaccctttatcttttagttatcaacactgttagtttgtccttgtga 23176962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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