View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16941_high_3 (Length: 359)
Name: NF16941_high_3
Description: NF16941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16941_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 180 - 307
Target Start/End: Complemental strand, 14571841 - 14571714
Alignment:
| Q |
180 |
ttctttggtagtataatttagtagaaagattttgtgttcgtagtttcaaggaacaaagttgaatttgtataattataaaacggttttcagtgctaaaatt |
279 |
Q |
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| T |
14571841 |
ttctttggtagtataatttagtagaaagattatgtgttcgtagtttcaaggaacaaatttgaatttgtataattataaaacggttttcagtgctaaaatt |
14571742 |
T |
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| Q |
280 |
taattagtaataatttctcaattctcca |
307 |
Q |
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| T |
14571741 |
taattagtaataatttctcaattctcca |
14571714 |
T |
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Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 14568347 - 14568528
Alignment:
| Q |
1 |
aatctggcatctaatgcatgcatgtgatgttatatgttccacacaattttgacacgaaagcttatttgtcataattgatagatctatgannnnnnnnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14568347 |
aatctggcatctaatgcatgcatgtgatgttatatgttccacacaattttgacacgaaagcttatttgtcataattgatagatctatga-ttttcctttt |
14568445 |
T |
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| Q |
101 |
nnnnnnccccttaatatatagagaggataatgcatgtattgttaaggttcatgtatgtccaatttcctcttttgtattcttct |
183 |
Q |
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| T |
14568446 |
ctttttccccttaatatatagagaggataatgcttgtattgttaaggttcatgtatgttcaatttcctcttttgtattcttct |
14568528 |
T |
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