View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16941_high_6 (Length: 345)
Name: NF16941_high_6
Description: NF16941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16941_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 21 - 316
Target Start/End: Complemental strand, 29963436 - 29963141
Alignment:
| Q |
21 |
acatcatcagccagattaaaagctccaagcatagccattccttcttgaaccaacttctttaaatcaaattgctcatacttacccctacccaatatcatct |
120 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29963436 |
acataatcagccagattaaaagctccaagcatagccattccttcttgaaccaacttctttaaatcaaattgctcatacttacccctacccaatatcatct |
29963337 |
T |
|
| Q |
121 |
tatacacaatatcttcaataagattctcaacaatctcactaacattcacaacctcacctaccaaaacaactttctctaatgacttaaccaaaacatccaa |
220 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29963336 |
tatacacaatatcttcaataagattctctacaatctcactaacattcacaacctcacctaccaaaacaactttctctaatgacttaaccaaaacatccaa |
29963237 |
T |
|
| Q |
221 |
ctccttcttcctaataggaccaaacatctcaacttttgaagcacttagaagtttcaaagtgcacagtttctttacactacgccaataaggaccata |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
29963236 |
ctccttcttcctaataggaccaaacatctcaacttttgaagcactaagaagtttcaaagtgcaaagtttctttacactacgccaataaggaccata |
29963141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 21 - 316
Target Start/End: Original strand, 30011362 - 30011657
Alignment:
| Q |
21 |
acatcatcagccagattaaaagctccaagcatagccattccttcttgaaccaacttctttaaatcaaattgctcatacttacccctacccaatatcatct |
120 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30011362 |
acataatcagccagattaaaagctccaagcatagccattccttcttgaaccaacttctttaaatcaaattgctcatacttacccctacccaatatcatct |
30011461 |
T |
|
| Q |
121 |
tatacacaatatcttcaataagattctcaacaatctcactaacattcacaacctcacctaccaaaacaactttctctaatgacttaaccaaaacatccaa |
220 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30011462 |
tatacacaatatcttcaataagattctctacaatctcactaacattcacaacctcacctaccaaaacaactttctctaatgacttaaccaaaacatccaa |
30011561 |
T |
|
| Q |
221 |
ctccttcttcctaataggaccaaacatctcaacttttgaagcacttagaagtttcaaagtgcacagtttctttacactacgccaataaggaccata |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
30011562 |
ctccttcttcctaataggaccaaacatctcaacttttgaagcactaagaagtttcaaagtgcaaagtttctttacactacgccaataaggaccata |
30011657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 21 - 310
Target Start/End: Complemental strand, 29991041 - 29990752
Alignment:
| Q |
21 |
acatcatcagccagattaaaagctccaagcatagccattccttcttgaaccaacttctttaaatcaaattgctcatacttacccctacccaatatcatct |
120 |
Q |
| |
|
|||| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
29991041 |
acataatcagccagattaaaagctccaatcaaagccaatccttcttgaaccaacttcttcaaatcaaattgctcatacttacctctacccaatatcatct |
29990942 |
T |
|
| Q |
121 |
tatacacaatatcttcaataagattctcaacaatctcactaacattcacaacctcacctaccaaaacaactttctctaatgacttaaccaaaacatccaa |
220 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||| | |||| | || | |||||||||| | |||| |
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|
| T |
29990941 |
tatacacaatatcttcaataacattctctacaatctcactgacattcacaacctcacctaccaaagaagcttttttcaaagtgttaaccaaaatacccaa |
29990842 |
T |
|
| Q |
221 |
ctccttcttcctaataggaccaaacatctcaacttttgaagcacttagaagtttcaaagtgcacagtttctttacactacgccaataagg |
310 |
Q |
| |
|
||||| | ||||||||||| || ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29990841 |
ctcctctgttctaataggacccgacttctcaacttttgaagcactaagaagtttcaaagtgcagagtttctttacactacgccaataagg |
29990752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 21 - 316
Target Start/End: Complemental strand, 29952331 - 29952036
Alignment:
| Q |
21 |
acatcatcagccagattaaaagctccaagcatagccattccttcttgaaccaacttctttaaatcaaattgctcatacttacccctacccaatatcatct |
120 |
Q |
| |
|
|||| ||||||||||||||||||||||| || ||||| | | |||||||||| | ||||||| |||||||| |||||||| | || |||||||||||||| |
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|
| T |
29952331 |
acataatcagccagattaaaagctccaaccaaagccaatacgtcttgaaccaccctctttaagtcaaattgatcatacttgctccgacccaatatcatct |
29952232 |
T |
|
| Q |
121 |
tatacacaatatcttcaataagattctcaacaatctcactaacattcacaacctcacctaccaaaacaactttctctaatgacttaaccaaaacatccaa |
220 |
Q |
| |
|
||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||| |||||| || ||||||| |||||||||| |||||||||||| |
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|
| T |
29952231 |
tatacacaatatcctcaataagattctctacaacctcactaacattcacaacctcactcaccaaagcagctttctccaatgacttaatcaaaacatccaa |
29952132 |
T |
|
| Q |
221 |
ctccttcttcctaataggaccaaacatctcaacttttgaagcacttagaagtttcaaagtgcacagtttctttacactacgccaataaggaccata |
316 |
Q |
| |
|
|| | ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||| |||||| | ||||||||||||||||||||||| |
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|
| T |
29952131 |
cttttccttcctaatagaaccaaacatctcaacttttgaagcactaagaagttttaaagtgcaaagtttcctcacactacgccaataaggaccata |
29952036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 21 - 316
Target Start/End: Complemental strand, 30006183 - 30005888
Alignment:
| Q |
21 |
acatcatcagccagattaaaagctccaagcatagccattccttcttgaaccaacttctttaaatcaaattgctcatacttacccctacccaatatcatct |
120 |
Q |
| |
|
|||| ||||||||||||||||||||| | || ||||||| ||||| |||| ||||| || | ||||||||||||||||||| || ||| || ||||||| |
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| T |
30006183 |
acataatcagccagattaaaagctcccatcaaagccattgcttctagaactaacttattcatgtcaaattgctcatacttactccgaccaaacatcatct |
30006084 |
T |
|
| Q |
121 |
tatacacaatatcttcaataagattctcaacaatctcactaacattcacaacctcacctaccaaaacaactttctctaatgacttaaccaaaacatccaa |
220 |
Q |
| |
|
||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||| |||| || ||||||| || || |||||||||||||||| |
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|
| T |
30006083 |
tatacacaatatcctcaataagattctctacaacctcactaacattcacaacctcaccctccaaggcagctttctccaaagatataaccaaaacatccaa |
30005984 |
T |
|
| Q |
221 |
ctccttcttcctaataggaccaaacatctcaacttttgaagcacttagaagtttcaaagtgcacagtttctttacactacgccaataaggaccata |
316 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| | |||| | ||||||||||||||||||||||| |
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|
| T |
30005983 |
cttctccttcctaataggaccaaacatctcaacttttgaagcactaaaaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccata |
30005888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 21 - 316
Target Start/End: Original strand, 30044971 - 30045266
Alignment:
| Q |
21 |
acatcatcagccagattaaaagctccaagcatagccattccttcttgaaccaacttctttaaatcaaattgctcatacttacccctacccaatatcatct |
120 |
Q |
| |
|
|||| ||||||||||||||||||||||| || ||||| ||||||||||||||| |||| || ||||||||||||||||||| || ||| || |||| || |
|
|
| T |
30044971 |
acataatcagccagattaaaagctccaatcaaagccaatccttcttgaaccaaactcttcaagtcaaattgctcatacttactccgaccaaacatcaact |
30045070 |
T |
|
| Q |
121 |
tatacacaatatcttcaataagattctcaacaatctcactaacattcacaacctcacctaccaaaacaactttctctaatgacttaaccaaaacatccaa |
220 |
Q |
| |
|
|||||||||||||||| || |||||||| |||| |||||||||||||||||||||||| |||||| || |||||| || | |||||||||| | ||| |
|
|
| T |
30045071 |
tatacacaatatcttctattagattctctacaacctcactaacattcacaacctcaccaaccaaagcagctttcttcaaagtgttaaccaaaatactcaa |
30045170 |
T |
|
| Q |
221 |
ctccttcttcctaataggaccaaacatctcaacttttgaagcacttagaagtttcaaagtgcacagtttctttacactacgccaataaggaccata |
316 |
Q |
| |
|
||||| || |||||||||||| |||||||||||||||||||||| ||||||||||||||||| | |||| | ||||||||||||||||||||||| |
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|
| T |
30045171 |
ctcctcttttctaataggaccagacatctcaacttttgaagcactaagaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccata |
30045266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 21 - 316
Target Start/End: Complemental strand, 29999745 - 29999450
Alignment:
| Q |
21 |
acatcatcagccagattaaaagctccaagcatagccattccttcttgaaccaacttctttaaatcaaattgctcatacttacccctacccaatatcatct |
120 |
Q |
| |
|
|||| ||||||||||||||||||||| | || || | ||| |||| || || |||||| || |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29999745 |
acataatcagccagattaaaagctcccatcaaagttaatccatctttaatcatcttcttcaagtcaaattgctcatacttacctctacccaatatcatct |
29999646 |
T |
|
| Q |
121 |
tatacacaatatcttcaataagattctcaacaatctcactaacattcacaacctcacctaccaaaacaactttctctaatgacttaaccaaaacatccaa |
220 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||| || | |||||||||||| |||| |
|
|
| T |
29999645 |
tatacacaatatcctcaataagattctcgacaatctcactaacattcacaacctcacctaccaaagaagctttcttcaaagtgttaaccaaaacacccaa |
29999546 |
T |
|
| Q |
221 |
ctccttcttcctaataggaccaaacatctcaacttttgaagcacttagaagtttcaaagtgcacagtttctttacactacgccaataaggaccata |
316 |
Q |
| |
|
||||| || ||||||||||| || ||||||||||||||||||| ||||||||||||||||| | |||| | | ||| ||||||||||||||||| |
|
|
| T |
29999545 |
ctcctcttttctaataggacccgacttctcaacttttgaagcactaagaagtttcaaagtgcaaaatttcctcatactgcgccaataaggaccata |
29999450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 21 - 316
Target Start/End: Original strand, 30070801 - 30071096
Alignment:
| Q |
21 |
acatcatcagccagattaaaagctccaagcatagccattccttcttgaaccaacttctttaaatcaaattgctcatacttacccctacccaatatcatct |
120 |
Q |
| |
|
|||| ||||||||||||||||||||||| || | ||| | ||| ||||||||| || || || ||||||||||||||||||| || || || |||| || |
|
|
| T |
30070801 |
acataatcagccagattaaaagctccaatcaaaaccaattcttgttgaaccaaatttttcaagtcaaattgctcatacttactccgtccaaacatcaact |
30070900 |
T |
|
| Q |
121 |
tatacacaatatcttcaataagattctcaacaatctcactaacattcacaacctcacctaccaaaacaactttctctaatgacttaaccaaaacatccaa |
220 |
Q |
| |
|
|||||||||||||||| || |||||||| || | |||||||||||||||||||||||| |||||| || |||||| || | |||||||||| | ||| |
|
|
| T |
30070901 |
tatacacaatatcttctattagattctctactacctcactaacattcacaacctcaccaaccaaagcagctttcttcaaagtgttaaccaaaatactcaa |
30071000 |
T |
|
| Q |
221 |
ctccttcttcctaataggaccaaacatctcaacttttgaagcacttagaagtttcaaagtgcacagtttctttacactacgccaataaggaccata |
316 |
Q |
| |
|
||||| || |||||||||||| |||||||||||||||||||||| ||||||||||||||||| | |||| | ||||||||||||||||||||||| |
|
|
| T |
30071001 |
ctcctcttttctaataggaccagacatctcaacttttgaagcactaagaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccata |
30071096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 309
Target Start/End: Complemental strand, 29944210 - 29943922
Alignment:
| Q |
21 |
acatcatcagccagattaaaagctccaagcatagccattccttcttgaaccaacttctttaaatcaaattgctcatacttacccctacccaatatcatct |
120 |
Q |
| |
|
|||| |||||||| |||||||||||||| || ||||||| | |||||||||||| |||||| |||| || |||||||||| || |||||| | ||||| |
|
|
| T |
29944210 |
acataatcagccatattaaaagctccaatcaaagccattacgtcttgaaccaacctctttaggtcaatatgatcatacttactccgacccaacaccatct |
29944111 |
T |
|
| Q |
121 |
tatacacaatatcttcaataagattctcaacaatctcactaacattcacaacctcacctaccaaaacaactttctctaatgacttaaccaaaacatccaa |
220 |
Q |
| |
|
||||||||||||| || |||| |||||| ||| |||||||||||||||||||||||| ||| | || ||||||| || || ||||||||||||||||| |
|
|
| T |
29944110 |
tatacacaatatcctctataacattctctacagcctcactaacattcacaacctcaccctccagagcagctttctccaaagatttaaccaaaacatccaa |
29944011 |
T |
|
| Q |
221 |
ctccttcttcctaataggaccaaacatctcaacttttgaagcacttagaagtttcaaagtgcacagtttctttacactacgccaataag |
309 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||| |||||||| |||||||| |||| || ||||| | |||||||||||||||| |
|
|
| T |
29944010 |
cttctccttcctaataggaccaaacatctcaactttcgaagcactaagaagttttgaagtacaaagttttctcacactacgccaataag |
29943922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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