View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16941_high_7 (Length: 338)
Name: NF16941_high_7
Description: NF16941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16941_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 2 - 329
Target Start/End: Complemental strand, 26481740 - 26481413
Alignment:
| Q |
2 |
catagcatgttgttatacaggcacattggtnnnnnnntgcatggacatggaccctaatatcaaaacatttgctgacataggtcaacatgcatttggatcc |
101 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26481740 |
catagcatgttgttatacaggcacattggtaaaaaaatgcatggacatggaccctaatatcaaaacatttgctgacataggtcaacatgcatttggatcc |
26481641 |
T |
|
| Q |
102 |
aaagggagattaatagtttcaatcatcatgaatgttgaactttatctagctgtaacaggttttcttattttagaaggagacaatctaaacaaactagtac |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26481640 |
aaagggagattaatagtttcaatcatcatgaatgttgaactttatctagctgtaacaggttttcttattttagaaggagacaatctaaacaaactagtac |
26481541 |
T |
|
| Q |
202 |
caaattcagaaatccacatagcaaatataacaattggtggaacaacaatgtttactatggttgctggtcttgttattttgcctactgttttgttagagga |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26481540 |
caaattcagaaatccacatagcaaatataacaattggtggaacaacaatgtttactatggtcgctggtcttgttattttgcctactgttttgttagagga |
26481441 |
T |
|
| Q |
302 |
tttgagtttgttgtcttatgtctctgct |
329 |
Q |
| |
|
||||||||||||||||||||| |||||| |
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| T |
26481440 |
tttgagtttgttgtcttatgtatctgct |
26481413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 2 - 329
Target Start/End: Complemental strand, 26508833 - 26508506
Alignment:
| Q |
2 |
catagcatgttgttatacaggcacattggtnnnnnnntgcatggacatggaccctaatatcaaaacatttgctgacataggtcaacatgcatttggatcc |
101 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||| |||||||| ||| ||| | |||||||||||||||||||||||||| |
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| T |
26508833 |
catagcatgttgttacacaggcacattggtcaaaaaatgcatggacatggaccttaatatcagaacctttccagacataggtcaacatgcatttggatca |
26508734 |
T |
|
| Q |
102 |
aaagggagattaatagtttcaatcatcatgaatgttgaactttatctagctgtaacaggttttcttattttagaaggagacaatctaaacaaactagtac |
201 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| ||| || ||||| ||||||||||||||||||||||||||||||||||| || |||||||| |||| |
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| T |
26508733 |
aaagggagattaatggtatcaatcatcatgaattctgagctctatcttgctgtaacaggttttcttattttagaaggagacaaccttaacaaacttgtac |
26508634 |
T |
|
| Q |
202 |
caaattcagaaatccacatagcaaatataacaattggtggaacaacaatgtttactatggttgctggtcttgttattttgcctactgttttgttagagga |
301 |
Q |
| |
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| || |||| ||| ||||| ||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
26508633 |
cgaacgtgcaaattcacctagcaggattaacaattggtggcacaacaatgtttactatggttactgctcttgttattttgcctactgttttgttagagga |
26508534 |
T |
|
| Q |
302 |
tttgagtttgttgtcttatgtctctgct |
329 |
Q |
| |
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||||||||||||||||||| |||||| |
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|
| T |
26508533 |
catgagtttgttgtcttatgtttctgct |
26508506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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