View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16941_high_9 (Length: 323)
Name: NF16941_high_9
Description: NF16941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16941_high_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 10 - 323
Target Start/End: Complemental strand, 40522927 - 40522621
Alignment:
| Q |
10 |
ctagctgttgc-tccaaaagcatcagacatacataatgcattcacaccaagttgacattttattccttctgtctatatttgcccccacaaagttataatc |
108 |
Q |
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| T |
40522927 |
ctagctgttgcctccaaaagcaacagacatacataatgcattcacaccaagttgacattttattgcttctgtctatatttgcccccacaaagttataatc |
40522828 |
T |
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| Q |
109 |
aattcactctcactcaactaatatataactttctttattttcttgccaaattatatacttttgtatccttcctttgattattttttcatagaatttgaac |
208 |
Q |
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| T |
40522827 |
aattcactctcactcaattaatatataactttctttattttcttgccaaattatatacttctgtatcct--------ttattttttcatagaatttgaac |
40522736 |
T |
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| Q |
209 |
cctcctaacccataaaaaaccatgaacaacacttccaatatatctgacaacccttcagagaactcaaatgtattggtatattattttattggtttttcat |
308 |
Q |
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| T |
40522735 |
cctcctaacccataaaaaaccatgaacaacacttccaatatatctgacaacccttcagagaactcaaatgaattagtatattattttattggtttttcat |
40522636 |
T |
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| Q |
309 |
tttccattaccctca |
323 |
Q |
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| T |
40522635 |
tttccattaccctca |
40522621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 172 - 293
Target Start/End: Complemental strand, 40526690 - 40526569
Alignment:
| Q |
172 |
tatccttcctttgattattttttcatagaatttgaaccctcctaacccataaaaaaccatgaacaacacttccaatatatctgacaacccttcagagaac |
271 |
Q |
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| T |
40526690 |
tatcctttccttgattcttttattattgaaattgaactctcccaacatatagaaaaccatgaacaacacttccattaattctgaaaatccttcagagaac |
40526591 |
T |
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| Q |
272 |
tcaaatgtattggtatattatt |
293 |
Q |
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| T |
40526590 |
tcaaatgcattagcatattatt |
40526569 |
T |
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