View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16941_low_1 (Length: 510)
Name: NF16941_low_1
Description: NF16941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16941_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 11 - 492
Target Start/End: Original strand, 33063339 - 33063816
Alignment:
| Q |
11 |
atcatcaccttacaaactggtgttatggtgttttgttaagagaatgtgtattgtattaaattttgttaaagagtttttagggaatacttgattgatggat |
110 |
Q |
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| T |
33063339 |
atcatcaccttacaaactggtgttatggggttttgttaagagaatgtgtattgtattaaattttgttaaagagtttttagtgaatacttgattgatggat |
33063438 |
T |
|
| Q |
111 |
tgttttaatctattcattatcatctaaattcaaatttaataaatccagctattttgtcacctcctagtccgtctctaatctaggatatgtatgattggag |
210 |
Q |
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| T |
33063439 |
tgttttaatctattcattatcatctaaattcaaatttaataaatccagctattttgtcacctcttagtccgtctctaatctaggatatgtatgattggag |
33063538 |
T |
|
| Q |
211 |
attcatcaactctctatatgatcacttaaggaatgaggatctttctcatcctcatttagaggagaaatgactttcaatcatgtatatcacaaattttgcg |
310 |
Q |
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| T |
33063539 |
attcatcaa--ctctatatgatcacttaaggaatgaggatctttctcatcctcatttagaggagaaatgactttcaatcatgtatatcacaaattttgcg |
33063636 |
T |
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| Q |
311 |
actttccaagtctcaagatgcattcatcctcataaaatgtatttcttaaagttttatcatttacatagaaattattatttatttaccaactaagttgaaa |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33063637 |
actttccaagtctcaagatgcattcatcctcataaaatgtatttct--aagttttatcatttacatagaaattatcatttatttaccaactaagttgaaa |
33063734 |
T |
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| Q |
411 |
tcaactgttgtatcttcacatattcattttaacttcaacttgtatggttcattttcatccgactcttgattcgtgatagtaa |
492 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33063735 |
tcaattgttgtatcttcacatattcattttaacttcaacttgtctggttcattttcatccgactcttgattcgtgatagtaa |
33063816 |
T |
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