View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16941_low_3 (Length: 243)
Name: NF16941_low_3
Description: NF16941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16941_low_3 |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: scaffold0076 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 38 - 225
Target Start/End: Original strand, 56882 - 57072
Alignment:
| Q |
38 |
ttttactatataccctacttttctt----aatttaactaacatgacaagttttgtcattgatattatagataatatgaggaacaagaatcacatagacac |
133 |
Q |
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| T |
56882 |
ttttactatataccctacttttcttttctaaataaaataacaagacaagttttgtcattgatattatagataatatgaggaacaagaatcacatagacac |
56981 |
T |
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| Q |
134 |
atgtgattatctatcctctacacaatatttcacctcatcagtgctcctataaacataccataattcttagtctttaaaacaagaatcacata |
225 |
Q |
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| T |
56982 |
atgtgattatctatactctacacaatattttacctcatcattgctcctataaacatactataacccttagt-tttaacacaagaatcacata |
57072 |
T |
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