View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16942_high_6 (Length: 254)

Name: NF16942_high_6
Description: NF16942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16942_high_6
NF16942_high_6
[»] chr8 (4 HSPs)
chr8 (4-238)||(27813904-27814136)
chr8 (4-117)||(25641055-25641168)
chr8 (28-113)||(4756122-4756207)
chr8 (15-86)||(4743905-4743976)
[»] chr4 (1 HSPs)
chr4 (4-117)||(53302428-53302541)
[»] chr7 (2 HSPs)
chr7 (4-117)||(4682990-4683103)
chr7 (28-69)||(1528192-1528233)
[»] chr2 (4 HSPs)
chr2 (4-117)||(30269102-30269215)
chr2 (4-117)||(31332013-31332126)
chr2 (4-117)||(31338742-31338856)
chr2 (8-77)||(31481979-31482046)
[»] chr6 (1 HSPs)
chr6 (4-117)||(30825001-30825114)
[»] chr3 (3 HSPs)
chr3 (4-117)||(7403992-7404105)
chr3 (7-117)||(36086937-36087047)
chr3 (7-51)||(16456650-16456694)
[»] chr5 (4 HSPs)
chr5 (4-117)||(5076041-5076154)
chr5 (4-117)||(37190456-37190569)
chr5 (4-117)||(7413069-7413182)
chr5 (57-117)||(37190558-37190618)
[»] chr1 (2 HSPs)
chr1 (15-102)||(47694191-47694278)
chr1 (121-176)||(43323684-43323740)


Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 4 - 238
Target Start/End: Original strand, 27813904 - 27814136
Alignment:
Q  4 agatgcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcataaaggttgat 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  27813904 agatgcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattgtaccataaaggttgat 27814003  T
Q  104 tgaagcattttatctggttaggatgacatactatatcattagtaaaataatattaagatcacgagtgaggtatattgtgtgcaccctttaatttttgaaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||    
T  27814004 tgaagcattttatctggttaggatgacatactatatcattagtaaaataatattaagatcacgagtgagg--tattgtgtgcaccctttaattttcgaaa 27814101  T
Q  204 ctctttaagtaggtgctttggtgcaaccttcatgg 238  Q
    |||||||||||| ||||||||||||||||||||||    
T  27814102 ctctttaagtagatgctttggtgcaaccttcatgg 27814136  T

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Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 25641055 - 25641168
Alignment:
Q  4 agatgcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcataaaggttgat 103  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || | |||||||||||||    
T  25641055 agatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaacattaagcactgtaccataaaggttgat 25641154  T
Q  104 tgaagcattttatc 117  Q
    ||||||||||||||    
T  25641155 tgaagcattttatc 25641168  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 4756122 - 4756207
Alignment:
Q  28 agattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcataaaggttgattgaagcattt 113  Q
    ||||||||||||||||| ||||||| || ||||||||||||| ||| ||| ||||||||| | ||||||| ||| || ||||||||    
T  4756122 agattagagaagtaaatcaaatttgattgaagcattttatcaaacagaaaacaagcattgtaccataaagattgtttaaagcattt 4756207  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 4743905 - 4743976
Alignment:
Q  15 aatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcatt 86  Q
    ||||||||| ||||||||||||||||||||| ||| ||||| |||||||| |||| ||| ||| ||||||||    
T  4743905 aatcacattactgagattagagaagtaaatacaatctggttgaagcatttcatcaaacagaaaacaagcatt 4743976  T

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Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 53302428 - 53302541
Alignment:
Q  4 agatgcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcataaaggttgat 103  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | |||||||||||||    
T  53302428 agatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaacattaagcattgtaccataaaggttgat 53302527  T
Q  104 tgaagcattttatc 117  Q
    ||||||||||||||    
T  53302528 tgaagcattttatc 53302541  T

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Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 4683103 - 4682990
Alignment:
Q  4 agatgcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcataaaggttgat 103  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || | |||||||||||||    
T  4683103 agatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaacattaagcactgtaccataaaggttgat 4683004  T
Q  104 tgaagcattttatc 117  Q
    ||||||||||||||    
T  4683003 tgaagcattttatc 4682990  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 1528233 - 1528192
Alignment:
Q  28 agattagagaagtaaataaaatttggttcaagcattttatca 69  Q
    |||||| ||||||||||||||||||||| |||||||||||||    
T  1528233 agattaaagaagtaaataaaatttggttgaagcattttatca 1528192  T

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Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 30269102 - 30269215
Alignment:
Q  4 agatgcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcataaaggttgat 103  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | ||||||||| |||    
T  30269102 agatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaacattaagcattgtaccataaaggtagat 30269201  T
Q  104 tgaagcattttatc 117  Q
    ||||||||||||||    
T  30269202 tgaagcattttatc 30269215  T

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Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 31332126 - 31332013
Alignment:
Q  4 agatgcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcataaaggttgat 103  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || | |||||||||||||    
T  31332126 agatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaacattaagcactgtaccataaaggttgat 31332027  T
Q  104 tgaagcattttatc 117  Q
    ||||||||||||||    
T  31332026 tgaagcattttatc 31332013  T

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Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 31338856 - 31338742
Alignment:
Q  4 agatgcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcat-aaaggttga 102  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || | ||| |||||||||    
T  31338856 agatgcaggagaatcacatttctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaacattaagcactgtaccataaaaggttga 31338757  T
Q  103 ttgaagcattttatc 117  Q
    |||||||||||||||    
T  31338756 ttgaagcattttatc 31338742  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 31481979 - 31482046
Alignment:
Q  8 gcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaa 77  Q
    |||| ||||||||||| ||||  ||||||||||||||||||||||| | ||||||||||||| |||||||    
T  31481979 gcagaagaatcacattactga--ttagagaagtaaataaaatttggcttaagcattttatcaaacaaaaa 31482046  T

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Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 30825001 - 30825114
Alignment:
Q  4 agatgcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcataaaggttgat 103  Q
    ||||||||||||||||||||| ||||||||||  ||||||||||||||||||||  ||||| |||||||||||||||||||||| | |||||||||||||    
T  30825001 agatgcaggagaatcacattgatgagattagattagtaaataaaatttggttcactcatttgatcagacaaaaatcaagcattgtaccataaaggttgat 30825100  T
Q  104 tgaagcattttatc 117  Q
    ||||||||||||||    
T  30825101 tgaagcattttatc 30825114  T

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Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 7404105 - 7403992
Alignment:
Q  4 agatgcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcataaaggttgat 103  Q
    |||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||| || ||||| || | |||||||||||||    
T  7404105 agatgcaggagaatcacatttctgagattagaggagtaaataatatttggttcaagcattttatcagacaaacattaagcactgtaccataaaggttgat 7404006  T
Q  104 tgaagcattttatc 117  Q
    ||||||||||||||    
T  7404005 tgaagcattttatc 7403992  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 36086937 - 36087047
Alignment:
Q  7 tgcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcat-aaaggttgattg 105  Q
    ||||| ||||||| ||| ||||||||||| ||||||| ||||||||||| ||||||||||||| ||| ||| || | |||| | ||| |||| ||| |||    
T  36086937 tgcagaagaatcagattactgagattaga-aagtaaacaaaatttggttgaagcattttatcaaacataaaacatgaattgtaccataaaagtttggttg 36087035  T
Q  106 aagcattttatc 117  Q
    ||||||||||||    
T  36087036 aagcattttatc 36087047  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 16456694 - 16456650
Alignment:
Q  7 tgcaggagaatcacattgctgagattagagaagtaaataaaattt 51  Q
    ||||||||||||||||| || ||||||||||||||||||||||||    
T  16456694 tgcaggagaatcacattactaagattagagaagtaaataaaattt 16456650  T

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Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 5076154 - 5076041
Alignment:
Q  4 agatgcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcataaaggttgat 103  Q
    |||||| ||||||||||||| | ||  || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||    
T  5076154 agatgctggagaatcacattacagatttttgagaagtaaataaaatttggttcaagcattttatcaaacaaaaatcaagcattgtaccataaaggttgat 5076055  T
Q  104 tgaagcattttatc 117  Q
    ||| ||||||||||    
T  5076054 tgaggcattttatc 5076041  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 37190456 - 37190569
Alignment:
Q  4 agatgcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcataaaggttgat 103  Q
    |||||| ||||||||||||| | || ||| |||||||||||||||||| |||||| |||||||||| ||||||||||||||||| | |||||||||||||    
T  37190456 agatgctggagaatcacattacagatattcgagaagtaaataaaatttagttcaaacattttatcaaacaaaaatcaagcattgtaccataaaggttgat 37190555  T
Q  104 tgaagcattttatc 117  Q
    ||||||||||||||    
T  37190556 tgaagcattttatc 37190569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 7413069 - 7413182
Alignment:
Q  4 agatgcaggagaatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcataaaggttgat 103  Q
    |||||| ||||||||||||| |  | ||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||    
T  7413069 agatgctggagaatcacattacaaatattcgagaagtaaaaaaaatttggttcaagcattttatcaaacaaaaatcaagcattgtaccataaaggttgat 7413168  T
Q  104 tgaagcattttatc 117  Q
    ||| ||||||||||    
T  7413169 tgaggcattttatc 7413182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 37190558 - 37190618
Alignment:
Q  57 aagcattttatcagacaaaaatcaagcattggatcataaaggttgattgaagcattttatc 117  Q
    ||||||||||||| ||| ||| |||||||||  |||||||| ||  |||||||||||||||    
T  37190558 aagcattttatcaaacacaaaacaagcattgtgtcataaagtttagttgaagcattttatc 37190618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 47694278 - 47694191
Alignment:
Q  15 aatcacattgctgagattagagaagtaaataaaatttggttcaagcattttatcagacaaaaatcaagcattggatcataaaggttga 102  Q
    ||||||||| | ||||||||||||||||||||||||||||  ||||||||||||| ||| |||  | |||||| | ||||||| ||||    
T  47694278 aatcacattacggagattagagaagtaaataaaatttggtcgaagcattttatcaaacacaaaagatgcattgtaccataaagtttga 47694191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 43323740 - 43323684
Alignment:
Q  121 ttaggatgacatactatatcattagt-aaaataatattaagatcacgagtgaggtat 176  Q
    ||||||||||||||||||||||||   |||||||||||||||||| |||||||||||    
T  43323740 ttaggatgacatactatatcattaacgaaaataatattaagatcatgagtgaggtat 43323684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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