View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16942_low_1 (Length: 512)
Name: NF16942_low_1
Description: NF16942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16942_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 10 - 493
Target Start/End: Original strand, 40567562 - 40568042
Alignment:
| Q |
10 |
attattctctagatattaatgaatgcatggaatccaacaattgtgttgacggggcaacatgcatcaactttcctggaagctatcactgtttatgcccgga |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40567562 |
attattctctagatattaatgaatgcatggaatccaacaattgtgttgatggggcaacatgcatcaactttcctggaagctatcactgtttatgcccgga |
40567661 |
T |
|
| Q |
110 |
aggatatgaaggagacgggaaaagtaatggaacaagatgcagttcaaaatccagtaccaaacaaaggaaagagattatattgatcatttcattgagtgag |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40567662 |
aggatatgaaggagacgggaaaagtaatggaacaagatgcagttcaaaatccagtaccaaacaaaggaaagagattatattgatcatttcattgagtgag |
40567761 |
T |
|
| Q |
210 |
tacaacaacacattctattctggattcattcataacaaagatcatgcaaacaaattttattttcacaattaaattgttgaaacttgaaacatttcattga |
309 |
Q |
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| T |
40567762 |
tacaacaacacactctattctggattcattcataacaaagatcatgcaaacaaattttattttcacaattaaattgttgaaacttgaaacatttcattga |
40567861 |
T |
|
| Q |
310 |
taaccacaatgttattccatgtcataaattgttgttcagaactgaaagtcatacacaatgtattcataacagtggcattttgagatgttgacaacatgaa |
409 |
Q |
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| T |
40567862 |
caaccacaatgttattccatgtcataaattgttgttcagaactgaaagtcatacac---gtattcataacagtggcattttgagatgttgacaacatgaa |
40567958 |
T |
|
| Q |
410 |
actgacttgaaacatcaacaagctacgaaaagcagaaaggaaatgaataagtttccatttgtttatgtccaggtgtcagcgtaa |
493 |
Q |
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| T |
40567959 |
actgacttgaaacatcaacaagctacgaaaagcagaaaggaaatgaataagtttccatttgtttatgtccaggtgtcagcgtaa |
40568042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 49 - 216
Target Start/End: Original strand, 40572188 - 40572355
Alignment:
| Q |
49 |
attgtgttgacggggcaacatgcatcaactttcctggaagctatcactgtttatgcccggaaggatatgaaggagacgggaaaagtaatggaacaagatg |
148 |
Q |
| |
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|||||||||| | ||||||||||||| | ||||||| ||||| || ||||||||||| ||||||||||| ||||||||||||| |||||||||| |||| |
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| T |
40572188 |
attgtgttgaggaggcaacatgcatcgatcttcctgggagctaccattgtttatgcccagaaggatatgagggagacgggaaaaataatggaacaggatg |
40572287 |
T |
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| Q |
149 |
cagttcaaaatccagtaccaaacaaaggaaagagattatattgatcatttcattgagtgagtacaaca |
216 |
Q |
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| T |
40572288 |
cagtccaaaatccagtaccaaatcaaggaaagatatcatgttaactatcgcattgagtgagtacaaca |
40572355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 10 - 170
Target Start/End: Original strand, 40601143 - 40601303
Alignment:
| Q |
10 |
attattctctagatattaatgaatgcatggaatccaacaattgtgttgacggggcaacatgcatcaactttcctggaagctatcactgtttatgcccgga |
109 |
Q |
| |
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||||| || ||||| ||||||| |||||||||||||| | |||||||| | ||| | ||||||||| ||| |||||||| || |||| |||||| || |
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| T |
40601143 |
attatcctttagatgttaatgattgcatggaatccaattactgtgttgaggaggcgagatgcatcaatcatcccggaagctaccattgttcatgcccaga |
40601242 |
T |
|
| Q |
110 |
aggatatgaaggagacgggaaaagtaatggaacaagatgcagttcaaaatccagtaccaaa |
170 |
Q |
| |
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||||||||| ||||||||||||| |||||||||| |||||||| | || |||||||||||| |
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| T |
40601243 |
aggatatgagggagacgggaaaaataatggaacaggatgcagtccgaactccagtaccaaa |
40601303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 40578611 - 40578796
Alignment:
| Q |
19 |
tagatattaatgaatgcatggaatccaacaattgtgttgacggggcaacatgcatcaactttcctggaagctatcactgtttatgcccggaaggatatga |
118 |
Q |
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||||| || ||||||||| ||||||||| | ||| |||| ||||| ||||||||||| ||||||||||||| || ||||||||||| |||||||||| |
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| T |
40578611 |
tagatgttgatgaatgcaaggaatccaattactgttttgagggggcgacatgcatcaatcttcctggaagctaccattgtttatgcccaaaaggatatga |
40578710 |
T |
|
| Q |
119 |
aggagacgggaaaagtaatggaacaagatgcagttcaaaatccagtaccaaacaaaggaaagagattatattgatcatttcattgagtgagtacaaca |
216 |
Q |
| |
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||||||| |||| |||||||||| ||||||||||||||||| ||| |||||||| || || |||||| || ||||||||||||||| |
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| T |
40578711 |
aggagac------------ggaaaaagatgcagtccaaaatccagtaccaaatcaagtaaagagatcatgttaatcattgcactgagtgagtacaaca |
40578796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 160
Target Start/End: Original strand, 40590555 - 40590705
Alignment:
| Q |
10 |
attattctctagatattaatgaatgcatggaatccaacaattgtgttgacggggcaacatgcatcaactttcctggaagctatcactgtttatgcccgga |
109 |
Q |
| |
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|||||||| |||||||||||||||||| ||| || || | |||||| | | |||||||||| ||| ||||||||||||| || |||||||||||| | |
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| T |
40590555 |
attattctttagatattaatgaatgcacggagtctaatgactgtgttcaagaggcaacatgcgacaatcttcctggaagctaccattgtttatgcccgaa |
40590654 |
T |
|
| Q |
110 |
aggatatgaaggagacgggaaaagtaatggaacaagatgcagttcaaaatc |
160 |
Q |
| |
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|||| |||| |||||||| || | ||||| |||| ||||| | ||||||| |
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| T |
40590655 |
aggacatgagggagacggaaagatgaatggcacaaaatgcaatccaaaatc |
40590705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 40596748 - 40596862
Alignment:
| Q |
19 |
tagatattaatgaatgcatggaatccaacaattgtgttgacggggcaacatgcatcaactttcctggaagctatcactgtttatgcccggaaggatatga |
118 |
Q |
| |
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| T |
40596748 |
tagatgttgatgaatgcaaggaatccaatgactgttttaagggggcgacatgcaccaatcttcctggaagttaccattgtttatgcccaaaaggatatga |
40596847 |
T |
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| Q |
119 |
aggagacgggaaaag |
133 |
Q |
| |
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| T |
40596848 |
aggagacggaaaaag |
40596862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 40596860 - 40596932
Alignment:
| Q |
143 |
aagatgcagttcaaaatccagtaccaaacaaaggaaagagattatattgatcatttcattgagtgagtacaac |
215 |
Q |
| |
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|||||||||| |||||||| ||||||| |||||||||| |||||| ||| | ||||||||||||||||| |
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| T |
40596860 |
aagatgcagtcaaaaatccattaccaaatcaaggaaagagtacatattggtcactgcattgagtgagtacaac |
40596932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 10 - 246
Target Start/End: Complemental strand, 2016190 - 2015957
Alignment:
| Q |
10 |
attattctctagatattaatgaatgcatggaatccaacaattgtgttgacggggcaacatgcatcaactttcctggaagctatcactgtttatgcccgga |
109 |
Q |
| |
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||||| || |||||||||||||||| ||||| ||||| | |||||||| | |||||||||| ||| ||||||||||||| || |||||||| |||| |
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| T |
2016190 |
attatcctttagatattaatgaatgtatggagtccaatgactgtgttgaggaagcaacatgcaccaatcttcctggaagctaccagtgtttatgtccggc |
2016091 |
T |
|
| Q |
110 |
aggatatgaaggagacgggaaaagtaatggaacaagatgcagttcaaaatccagtaccaaacaaaggaaagagattatattgatcatttcattgagtgag |
209 |
Q |
| |
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|| |||||| ||| ||||||| | |||||||||| ||||||| ||||||||| ||||||| ||| |||||||| ||| |||||||| || |||||||| |
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| T |
2016090 |
agaatatgagggaaacgggaagatgaatggaacaaaatgcagtccaaaatccaataccaaatcaagaaaagagatcataatgatcattgcaatgagtgag |
2015991 |
T |
|
| Q |
210 |
tacaacaacacattctattctggattcattcataaca |
246 |
Q |
| |
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||| ||||||||||||| | ||| ||||||||||| |
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| T |
2015990 |
tac---aacacattctattattgatgcattcataaca |
2015957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 453
Target Start/End: Complemental strand, 2015771 - 2015730
Alignment:
| Q |
412 |
tgacttgaaacatcaacaagctacgaaaagcagaaaggaaat |
453 |
Q |
| |
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||||||||||||||||||||||| ||| ||||||||| |||| |
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|
| T |
2015771 |
tgacttgaaacatcaacaagctaggaagagcagaaagaaaat |
2015730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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