View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16942_low_2 (Length: 448)
Name: NF16942_low_2
Description: NF16942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16942_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 431
Target Start/End: Original strand, 35738668 - 35739061
Alignment:
| Q |
16 |
atgataaatttgggaattataaaacgcgttaggaaatttctggcaattaaagaggtaaaaaatcgccnnnnnnnttaattataaatctgaacaagtcata |
115 |
Q |
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| T |
35738668 |
atgataaatttgggaattataaaacgcgttaggaaatttttggcaattaaagaggtaaaaaatcggcaaaaaaattaattataaatatgaacaagtcata |
35738767 |
T |
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| Q |
116 |
tatgtcaaccgtatggaccaagcaaatcgtttgaagggaatctgaataacaaatgatgtctttgaaccctgcgtcttaaccaattttgattttattttta |
215 |
Q |
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| T |
35738768 |
tatgtcaaccgtatggaccaagcaaatcgtttgaagggaatctgaataacaaatgatgtctttgaaccctgcgtcttaaccaattttgattttattttta |
35738867 |
T |
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| Q |
216 |
cttgtgtannnnnnnnnnaatgtttacaaaatgatggatattaggttgtttgagtttgattgggaaaatcaagtagcatatgaaaacaac--caacttca |
313 |
Q |
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| T |
35738868 |
cttgtgta--ttttttttaatgtttacaaaatgatggatattaggttgtttgagtttgattgggaaaatcaactagcatatgaaaacaacttcaacttca |
35738965 |
T |
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| Q |
314 |
cttgaatgacatacataatctcataccatgccgaaatcatgaagatagaaaataaagaagtgaagatgaggttgaaaatgaagtgttgtcaatggcatca |
413 |
Q |
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| T |
35738966 |
cttcaat----------------------gccgaaatcatgaagatataaaataaagaagtgaagatgaggttgaaaatgaagtgttgtcaatggcatca |
35739043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 29711916 - 29711858
Alignment:
| Q |
129 |
tggaccaagcaaatcgtttgaagggaatctgaataacaaatgatgtctttgaaccctgc |
187 |
Q |
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| T |
29711916 |
tggaccaagcgaatggtttgaagggaatctgaatagcaaataatgtatctgaaccctgc |
29711858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 43097193 - 43097152
Alignment:
| Q |
144 |
gtttgaagggaatctgaataacaaatgatgtctttgaaccct |
185 |
Q |
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| T |
43097193 |
gtttgaagggaatatgaataacaaataatgtctttgaaccct |
43097152 |
T |
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