View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16942_low_3 (Length: 446)
Name: NF16942_low_3
Description: NF16942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16942_low_3 |
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| [»] scaffold0179 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 4e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 232 - 431
Target Start/End: Original strand, 894284 - 894469
Alignment:
| Q |
232 |
gcaagagagaagaaataagatataattttaccacgatattgcaatggtagcggaatcaattaaccatgaaagtgctttgttaccaccagggatcccctca |
331 |
Q |
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| T |
894284 |
gcaagagagaagaaataagatataattttaccacgatattgcaatggtagcggaatcaattaaccatgaaagtcatttgttaccaccagggatc------ |
894377 |
T |
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| Q |
332 |
tccccgttccctcaacctcactcttcaattacaattttcttttttgtattatttgcaaaggaccaataaaccagttactcttttcttgtaatttatgtag |
431 |
Q |
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| T |
894378 |
--------ccctcaacctcactcttcaattacaattttcttttttgtattatttgcaaaggaccaataaaccagttactcttttcttgtaatttatgtag |
894469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 101 - 380
Target Start/End: Complemental strand, 6570 - 6288
Alignment:
| Q |
101 |
ttttcagggtgttgagagtggtggattcattgatagagtctataaaaagattagtaagcgaaaaggagaagnnnnnnnnttatcctagaggagaaaggag |
200 |
Q |
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| T |
6570 |
ttttgagggtgttgagagtggtggattcattcatagagtctataaaaagattaataagcgaaaaggagaaggaaaaaaaatatcctagaggagaaaggag |
6471 |
T |
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| Q |
201 |
aggaatggannnnnnnnnnnnnnnnnnnnnngcaagagagaagaaataagatataattttaccacgatattgcaatggtagcggaatcaattaaccatga |
300 |
Q |
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| T |
6470 |
agggatggattttttatattttattttttttgcaagaga--agaaataagatataattttaccacaatattgcaatggtagtggaatccaacaaccatga |
6373 |
T |
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| Q |
301 |
aagtgcttt-----gttaccaccagggatcccctcatccccgttccctcaacctcactcttcaattacaattttcttttttgtat |
380 |
Q |
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| T |
6372 |
aagtgctttaatttgttaccaccagggatcccctcttccccgttccctcaacctcactcttcaattacaattttcttttttgtat |
6288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 373 - 431
Target Start/End: Complemental strand, 6277 - 6219
Alignment:
| Q |
373 |
ttttgtattatttgcaaaggaccaataaaccagttactcttttcttgtaatttatgtag |
431 |
Q |
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| T |
6277 |
ttttgtattatttgcaaaggaccaataaaccagttactcttttcttataacttctgtag |
6219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 6666 - 6629
Alignment:
| Q |
6 |
agcagcacagacacaaattcaccaataatcaaacaccc |
43 |
Q |
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| T |
6666 |
agcaacacagacacaaattcaccaataatcaaacaccc |
6629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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