View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16942_low_4 (Length: 386)
Name: NF16942_low_4
Description: NF16942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16942_low_4 |
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| [»] chr3 (7 HSPs) |
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| [»] scaffold0083 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 10372328 - 10371943
Alignment:
| Q |
1 |
tgattcttaatttgtaactttaagtgaatgctcatatgataaaaccatgcatttgttcaattaatattggttctaaatattcatattcctatatacattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10372328 |
tgattcttaatttgtaactttaagtgaatgctcatatgataaaaccatgcatttgttgaattaatattggttctaaatattcatattcctatatacattt |
10372229 |
T |
|
| Q |
101 |
gttgaattaacagttttgtttcttccaaataacctgcatgatttggtctaatagattagaatgcggtagggtttgtaatattctttatttgtagctttta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10372228 |
gttgaattaacagttttgtttcttccaaataacctgcatgatttggtctaatagattagaatgcggtagggtttgtaatattcttaatttgtagctttta |
10372129 |
T |
|
| Q |
201 |
gtggaagaatgtgagttgttgttgtttctaaaataataaataatgtggtcaaatagttaatacttatcctgttattttattttaaatgcctaatacaatt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10372128 |
gtggaagaatgtgagttgttgttgtttctaaaataataaataatgtggtcaaatagttaatacttatcctgttatttcattttaaatgcctaatacaatt |
10372029 |
T |
|
| Q |
301 |
ctctcatcaactgtgattccaatcaggattttgagaaaacagaaagtggaagcaaaatgttaagagcagagaatagaaactgatct |
386 |
Q |
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| T |
10372028 |
ctctcatcaactgtgattccaatcaggattttgagaaaacagaaagtggaagcaaaatgttaagagcagagaatagaaactgatct |
10371943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 10130687 - 10130918
Alignment:
| Q |
1 |
tgattcttaatttgtaactttaagtgaatgctcatatgataaaaccatgcatttgttcaattaatattggttctaaatattcatattcctatatacattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10130687 |
tgattcttaatttgtaactttaagtgaatgctcatatgataaaaccatgcatttgttgaattaatattggttctaaatattcatattcctatatacattt |
10130786 |
T |
|
| Q |
101 |
gttgaattaacagttttgtttcttccaaataacctgcatgatttggtctaatagattagaatgcggtagggtttgtaatattctttatttgtagctttta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10130787 |
gttgaattaacagttttgtttcttccaaataacctgcatgatttggtctaatagattagaatgcggtagggtttgtaatattcttaatttgtagctttta |
10130886 |
T |
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| Q |
201 |
gtggaagaatgtgagttgttgttgtttctaaa |
232 |
Q |
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|||||||||||||||||||| ||||||||||| |
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| T |
10130887 |
gtggaagaatgtgagttgttattgtttctaaa |
10130918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 9981187 - 9981316
Alignment:
| Q |
1 |
tgattcttaatttgtaactttaagtgaatgctcatatgataaaaccatgcatttgttcaattaatattggttctaaatattcatattcctatatacattt |
100 |
Q |
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|
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9981187 |
tgattcttaatttgtaattttaaatgaatgctcatatgataaaaccatgcatttgttgaattaatattggttctaaatattcatattcctatatacattt |
9981286 |
T |
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| Q |
101 |
gttgaattaacagttttgtttcttccaaat |
130 |
Q |
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|||||||||||| |||||||||||| |||| |
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| T |
9981287 |
gttgaattaacaattttgtttcttcaaaat |
9981316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 10360070 - 10359941
Alignment:
| Q |
1 |
tgattcttaatttgtaactttaagtgaatgctcatatgataaaaccatgcatttgttcaattaatattggttctaaatattcatattcctatatacattt |
100 |
Q |
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|
||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10360070 |
tgattcttaatttgtaattttaaatgaatgctcgtatgataaaaccatgcatttgttgaattaatattggttctaaatattcatattcctatatacattt |
10359971 |
T |
|
| Q |
101 |
gttgaattaacagttttgtttcttccaaat |
130 |
Q |
| |
|
|||||||||||| |||||||||||| |||| |
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| T |
10359970 |
gttgaattaacaattttgtttcttcaaaat |
10359941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 10264704 - 10264751
Alignment:
| Q |
1 |
tgattcttaatttgtaactttaagtgaatgctcatatgataaaaccat |
48 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10264704 |
tgattcttaatttgtaactttaagcgaatgctcatatgataaaaccat |
10264751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 8408119 - 8408164
Alignment:
| Q |
187 |
atttgtagcttttagtggaagaatgtgagttgttgttgtttctaaa |
232 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||| ||||||||||| |
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| T |
8408119 |
atttgtagctttaagtggaagaatgtgtgttgttattgtttctaaa |
8408164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 11772739 - 11772777
Alignment:
| Q |
3 |
attcttaatttgtaactttaagtgaatgctcatatgata |
41 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||| |
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| T |
11772739 |
attcttaatttgtagctttaagtgaatgttcatatgata |
11772777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 53950 - 53821
Alignment:
| Q |
1 |
tgattcttaatttgtaactttaagtgaatgctcatatgataaaaccatgcatttgttcaattaatattggttctaaatattcatattcctatatacattt |
100 |
Q |
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|
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
53950 |
tgattcttaatttgtaattttaaatgaatgctcatatgataaaaccatgcatttgttgaattaatattggttctaaatattcatattcctatatacattt |
53851 |
T |
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| Q |
101 |
gttgaattaacagttttgtttcttccaaat |
130 |
Q |
| |
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|||||||||||| |||||||||||| |||| |
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| T |
53850 |
gttgaattaacaattttgtttcttcaaaat |
53821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 21262404 - 21262359
Alignment:
| Q |
187 |
atttgtagcttttagtggaagaatgtgagttgttgttgtttctaaa |
232 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||| ||||||||||| |
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| T |
21262404 |
atttgtagctttaagtggaagaatgtgtgttgttattgtttctaaa |
21262359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 107
Target Start/End: Original strand, 11488900 - 11488933
Alignment:
| Q |
74 |
taaatattcatattcctatatacatttgttgaat |
107 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
11488900 |
taaatattcttattcctatatacatttgttgaat |
11488933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 37569896 - 37569941
Alignment:
| Q |
187 |
atttgtagcttttagtggaagaatgtgagttgttgttgtttctaaa |
232 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||| ||||||||||| |
|
|
| T |
37569896 |
atttgtagctttaagtggaagaatgtgtgttgttattgtttctaaa |
37569941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 37503217 - 37503172
Alignment:
| Q |
187 |
atttgtagcttttagtggaagaatgtgagttgttgttgtttctaaa |
232 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||| ||||||||||| |
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| T |
37503217 |
atttgtagctttaagtggaagaatgtgtgttgttattgtttctaaa |
37503172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 32041328 - 32041373
Alignment:
| Q |
187 |
atttgtagcttttagtggaagaatgtgagttgttgttgtttctaaa |
232 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||| ||||||||||| |
|
|
| T |
32041328 |
atttgtagctttaagtggaagaatgtgtgttgttattgtttctaaa |
32041373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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