View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16942_low_5 (Length: 309)
Name: NF16942_low_5
Description: NF16942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16942_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 10371949 - 10371654
Alignment:
| Q |
1 |
ctgatctagcatgcatattcattttcacataattgaactttaatatattttaagctatagaaaaaatatttttgattgggattaatacaaaacctgctac |
100 |
Q |
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| T |
10371949 |
ctgatctagcatgcatattcattttcacataattgaactttaatatattttaagctatagaaaaaatatttttgattgggattaatacaaaacctgctac |
10371850 |
T |
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| Q |
101 |
aaaatctagaaagtcaggaccaaaacttctttttacaatcaattccttca-----gtacaatcaaaacttcttttgacagcaggaaatgtaatttcaacc |
195 |
Q |
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| T |
10371849 |
aaaatctagaaagtcaggaccaaaacttctttttacaatcaattccttcaactatgtacaatcaaaacttcttttgacagcaggaaatgtaatttcaacc |
10371750 |
T |
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| Q |
196 |
gtcacccccacagcaaaaatggaattaagtttttggagtgtatataaatcttctcaatttctcatgctgtgtcataaacttcagtgacggtattat |
291 |
Q |
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| T |
10371749 |
gtcacccccacagcaaaaatggaattaagtttttggagtgtatataaatcttctcaatttctcatgctgtgtcataaacttcagtgacgatattat |
10371654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 10093861 - 10093919
Alignment:
| Q |
5 |
tctagcatgcatattcattttcacataattgaactttaatatattttaagctatagaaa |
63 |
Q |
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| T |
10093861 |
tctaacatgcatatttattttcacacaattgaactttaatatgttttaagctatagaaa |
10093919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 10200743 - 10200801
Alignment:
| Q |
5 |
tctagcatgcatattcattttcacataattgaactttaatatattttaagctatagaaa |
63 |
Q |
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| T |
10200743 |
tctaacatgcatatttattttcacacaattgaactttaatatgttttaagctatagaaa |
10200801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 10100633 - 10100675
Alignment:
| Q |
62 |
aaaaatatttttgattgggattaatacaaaacctgctacaaaa |
104 |
Q |
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| T |
10100633 |
aaaaatatttttgattgggaaaaatacaaaacctgatacaaaa |
10100675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 10208542 - 10208584
Alignment:
| Q |
62 |
aaaaatatttttgattgggattaatacaaaacctgctacaaaa |
104 |
Q |
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| T |
10208542 |
aaaaatatttttgattgggaaaaatacaaaacctgatacaaaa |
10208584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 291
Target Start/End: Original strand, 10489250 - 10489298
Alignment:
| Q |
243 |
atcttctcaatttctcatgctgtgtcataaacttcagtgacggtattat |
291 |
Q |
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| T |
10489250 |
atcttctcaatttctccggctttgccataaacttcaatgacggtattat |
10489298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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