View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16942_low_6 (Length: 258)
Name: NF16942_low_6
Description: NF16942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16942_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 11004860 - 11005106
Alignment:
| Q |
11 |
cagagaaatagtaagggccaaagttattagtttcaactgaaattgaaagacagaaccttctatttcgttcaaacatatatgtggtcatgatcaaacatct |
110 |
Q |
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| T |
11004860 |
cagagaaatagtaagggccaaagttattagagtcaactgaaattgaaagacagaaccttctatttcgttcaaacatatatgtggtcatgatcaaacatct |
11004959 |
T |
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| Q |
111 |
aaataagtacttgaagttagattcatgtaattatgattttgatcttgatcaacatgcaaaaactcatcaa------------------ataacataaatg |
192 |
Q |
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| T |
11004960 |
aaataagtacttgaagttagattcatgtaattatgattttgatcttgatcaacatgcaaaaactcatcaaataaaccaccactatcttataacataaatg |
11005059 |
T |
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| Q |
193 |
caaacaaggaacataacatagattaaaatttaaaacccaattaagtt |
239 |
Q |
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| T |
11005060 |
caaacaaggaacataacatagattaaaatttaaaacccaattaagtt |
11005106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 182
Target Start/End: Original strand, 29711593 - 29711630
Alignment:
| Q |
145 |
gattttgatcttgatcaacatgcaaaaactcatcaaat |
182 |
Q |
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| T |
29711593 |
gattttgatcttgatcaacatgcataaactcatcaaat |
29711630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 48734492 - 48734532
Alignment:
| Q |
144 |
tgattttgatcttgatcaacatgcaaaaactcatcaaataa |
184 |
Q |
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| T |
48734492 |
tgattttgatcttgatcaacatgcataaattcatcaaataa |
48734532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 48864997 - 48864949
Alignment:
| Q |
136 |
tgtaattatgattttgatcttgatcaacatgcaaaaactcatcaaataa |
184 |
Q |
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| T |
48864997 |
tgtaattgtgattttgatcttgatcaacatgcaaacattcagcaaataa |
48864949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 15349895 - 15349850
Alignment:
| Q |
136 |
tgtaattatgattttgatcttgatcaacatgcaaaaactcatcaaa |
181 |
Q |
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| T |
15349895 |
tgtaattgtgattttgatcttgtttaatatgcaaaaactcatcaaa |
15349850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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